Santiago de la Peña González
Personal Information
Organization / Workplace
Madrid Area, Spain Spain
Occupation
Bioinformatician en Centro de BiotecnologÃa y Genómica de Plantas (CBGP)
Industry
Medical / Health Care / Pharmaceuticals
Website
http://goo.gl/WGtNsrAbout
Biólogo con amplios conocimientos de Informática. Experiencia en análisis de datos de NGS y en desarrollo de algoritmos de text-mining.
Especialidades:
Next-generation sequencing:
Exome sequencing, RNA-seq, DeNovo assembly, Genome annotation, ChIP-Seq
Platforms: Illumina, Solid, 454.
Quality filtering. Alignment (BWA, Bowtie, GaTK..), Variant detection (Gatk, Samtools), Genome Annotation (Prokka, Blast, RAST, Glimmer..), Genome Assembly (spaDES, Soapdenovo, MIRA, Velvet), Comparative Genomics (Mauve, BRIG, Artemis..)
Text Mining:
Apache UIMA, Gate
Ontologies: ICD10, Human Phenotype Ontology (HPO), Gene Ontology (GO)
Vocabularies: UMLS
Metagenomics:
Pathways: Reactome, Pathwaycommo
Contact Details