際際滷shows by User: AnnLoraine / http://www.slideshare.net/images/logo.gif 際際滷shows by User: AnnLoraine / Tue, 02 Apr 2019 12:23:16 GMT 際際滷Share feed for 際際滷shows by User: AnnLoraine Use Integrated Genome Browser to explore, analyze, and publish genomic data /slideshow/use-integrated-genome-browser-to-explore-analyze-and-publish-genomic-data/139231716 2019-03-27-mcbios-190402122316
Demonstrates IGB features. Expanded from my ATTIS 2019 talk for University of Alabama Informatics Institute.]]>
Demonstrates IGB features. Expanded from my ATTIS 2019 talk for University of Alabama Informatics Institute.]]> Tue, 02 Apr 2019 12:23:16 GMT /slideshow/use-integrated-genome-browser-to-explore-analyze-and-publish-genomic-data/139231716 AnnLoraine@slideshare.net(AnnLoraine) Use Integrated Genome Browser to explore, analyze, and publish genomic data AnnLoraine Demonstrates IGB features. Expanded from my ATTIS 2019 talk for University of Alabama Informatics Institute. <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/2019-03-27-mcbios-190402122316-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> Demonstrates IGB features. Expanded from my ATTIS 2019 talk for University of Alabama Informatics Institute.
Use Integrated Genome Browser to explore, analyze, and publish genomic data from Ann Loraine
]]> 275 3 https://cdn.slidesharecdn.com/ss_thumbnails/2019-03-27-mcbios-190402122316-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Visualize genomes with Integrated Genome Browser /slideshow/visualize-genomes-with-integrated-genome-browser/87646920 2018-02-08-igb-for-personalis-180209155659
Presentation for Personalis in Menlo Park Feb. 8, 2018]]>
Presentation for Personalis in Menlo Park Feb. 8, 2018]]> Fri, 09 Feb 2018 15:56:59 GMT /slideshow/visualize-genomes-with-integrated-genome-browser/87646920 AnnLoraine@slideshare.net(AnnLoraine) Visualize genomes with Integrated Genome Browser AnnLoraine Presentation for Personalis in Menlo Park Feb. 8, 2018 <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/2018-02-08-igb-for-personalis-180209155659-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> Presentation for Personalis in Menlo Park Feb. 8, 2018
Visualize genomes with Integrated Genome Browser from Ann Loraine
]]> 327 1 https://cdn.slidesharecdn.com/ss_thumbnails/2018-02-08-igb-for-personalis-180209155659-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 BINF 3121 Data Analysis Report How-To /slideshow/binf-3121-data-analysis-report-howto-85604058/85604058 dataanalysisreporthowto-180102165530
How to craft a convincing and easy-to-understand self-documenting data analysis report using R Markdown. A guide for undergraduate students taking BINF 3121 Statistics for Bioinformatics at UNC Charlotte. ]]>
How to craft a convincing and easy-to-understand self-documenting data analysis report using R Markdown. A guide for undergraduate students taking BINF 3121 Statistics for Bioinformatics at UNC Charlotte. ]]> Tue, 02 Jan 2018 16:55:29 GMT /slideshow/binf-3121-data-analysis-report-howto-85604058/85604058 AnnLoraine@slideshare.net(AnnLoraine) BINF 3121 Data Analysis Report How-To AnnLoraine How to craft a convincing and easy-to-understand self-documenting data analysis report using R Markdown. A guide for undergraduate students taking BINF 3121 Statistics for Bioinformatics at UNC Charlotte. <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/dataanalysisreporthowto-180102165530-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> How to craft a convincing and easy-to-understand self-documenting data analysis report using R Markdown. A guide for undergraduate students taking BINF 3121 Statistics for Bioinformatics at UNC Charlotte.
BINF 3121 Data Analysis Report How-To from Ann Loraine
]]> 134 1 https://cdn.slidesharecdn.com/ss_thumbnails/dataanalysisreporthowto-180102165530-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Giving great talks in Bioinformatics - from Professional Communication class taught (for a time) at UNC Charlotte /slideshow/giving-great-talks-in-bioinformatocs-from-professional-communication-class-taught-for-a-time-at-unc-charlotte/65241402 sessionone-10-23-2015-160822153556
This slideshow gives advice on how to give effective presentations in science. This was a slidedeck we presented in the first class meeting - where we introduced the class and explained why and how to give good talks. We taught the class twice - in 2014 and 2015 - at UNC Charlotte for their Professional Science Masters program.]]>
This slideshow gives advice on how to give effective presentations in science. This was a slidedeck we presented in the first class meeting - where we introduced the class and explained why and how to give good talks. We taught the class twice - in 2014 and 2015 - at UNC Charlotte for their Professional Science Masters program.]]> Mon, 22 Aug 2016 15:35:56 GMT /slideshow/giving-great-talks-in-bioinformatocs-from-professional-communication-class-taught-for-a-time-at-unc-charlotte/65241402 AnnLoraine@slideshare.net(AnnLoraine) Giving great talks in Bioinformatics - from Professional Communication class taught (for a time) at UNC Charlotte AnnLoraine This slideshow gives advice on how to give effective presentations in science. This was a slidedeck we presented in the first class meeting - where we introduced the class and explained why and how to give good talks. We taught the class twice - in 2014 and 2015 - at UNC Charlotte for their Professional Science Masters program. <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/sessionone-10-23-2015-160822153556-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> This slideshow gives advice on how to give effective presentations in science. This was a slidedeck we presented in the first class meeting - where we introduced the class and explained why and how to give good talks. We taught the class twice - in 2014 and 2015 - at UNC Charlotte for their Professional Science Masters program.
Giving great talks in Bioinformatics - from Professional Communication class taught (for a time) at UNC Charlotte from Ann Loraine
]]> 602 13 https://cdn.slidesharecdn.com/ss_thumbnails/sessionone-10-23-2015-160822153556-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Interviewing - why some questions are off limits /slideshow/interviewing-why-some-questions-are-off-limits/64161811 interviewquestions-160719121032
From BINF 6153 Professional Development class taught at University of North Carolina at Charlotte. ]]>
From BINF 6153 Professional Development class taught at University of North Carolina at Charlotte. ]]> Tue, 19 Jul 2016 12:10:32 GMT /slideshow/interviewing-why-some-questions-are-off-limits/64161811 AnnLoraine@slideshare.net(AnnLoraine) Interviewing - why some questions are off limits AnnLoraine From BINF 6153 Professional Development class taught at University of North Carolina at Charlotte. <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/interviewquestions-160719121032-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> From BINF 6153 Professional Development class taught at University of North Carolina at Charlotte.
Interviewing - why some questions are off limits from Ann Loraine
]]> 310 5 https://cdn.slidesharecdn.com/ss_thumbnails/interviewquestions-160719121032-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 RNA-Seq Analysis of Blueberry Fruit Development and Ripening /slideshow/rnaseq-analysis-of-blueberry-fruit-development-and-ripening/56861563 loraine-fruitsnuts-pag-2016-final-160109191534
Presentation at Plant Animal Genome Conference 2016 - features Integrated Genome Browser and developmental time course RNA-Seq data set from Illumina sequencing]]>
Presentation at Plant Animal Genome Conference 2016 - features Integrated Genome Browser and developmental time course RNA-Seq data set from Illumina sequencing]]> Sat, 09 Jan 2016 19:15:34 GMT /slideshow/rnaseq-analysis-of-blueberry-fruit-development-and-ripening/56861563 AnnLoraine@slideshare.net(AnnLoraine) RNA-Seq Analysis of Blueberry Fruit Development and Ripening AnnLoraine Presentation at Plant Animal Genome Conference 2016 - features Integrated Genome Browser and developmental time course RNA-Seq data set from Illumina sequencing <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/loraine-fruitsnuts-pag-2016-final-160109191534-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> Presentation at Plant Animal Genome Conference 2016 - features Integrated Genome Browser and developmental time course RNA-Seq data set from Illumina sequencing
RNA-Seq Analysis of Blueberry Fruit Development and Ripening from Ann Loraine
]]> 1299 8 https://cdn.slidesharecdn.com/ss_thumbnails/loraine-fruitsnuts-pag-2016-final-160109191534-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Introducing ProtAnnot - Araport workshop at PAG 2016 /slideshow/introducing-protannot-araport-workshop-at-pag-2016/56859453 loraine-araportworkshop-pag-2016-final-160109172229
This short talk introduces ProtAnnot, a tool for visualizing effects of alternative splicing on protein and gene function using a genome browser.]]>
This short talk introduces ProtAnnot, a tool for visualizing effects of alternative splicing on protein and gene function using a genome browser.]]> Sat, 09 Jan 2016 17:22:29 GMT /slideshow/introducing-protannot-araport-workshop-at-pag-2016/56859453 AnnLoraine@slideshare.net(AnnLoraine) Introducing ProtAnnot - Araport workshop at PAG 2016 AnnLoraine This short talk introduces ProtAnnot, a tool for visualizing effects of alternative splicing on protein and gene function using a genome browser. <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/loraine-araportworkshop-pag-2016-final-160109172229-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> This short talk introduces ProtAnnot, a tool for visualizing effects of alternative splicing on protein and gene function using a genome browser.
Introducing ProtAnnot - Araport workshop at PAG 2016 from Ann Loraine
]]> 1159 7 https://cdn.slidesharecdn.com/ss_thumbnails/loraine-araportworkshop-pag-2016-final-160109172229-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Em pcr 16x9 /slideshow/em-pcr-16x9/55058018 empcr-16x9-151112214026-lva1-app6892
Describes using emulsion PCR to decorate Ion Sphere Particles (beads) with library molecules for Ion Torrent PGM sequencing. This is from a class Ann taught on Genomic Biotechnology.]]>
Describes using emulsion PCR to decorate Ion Sphere Particles (beads) with library molecules for Ion Torrent PGM sequencing. This is from a class Ann taught on Genomic Biotechnology.]]> Thu, 12 Nov 2015 21:40:26 GMT /slideshow/em-pcr-16x9/55058018 AnnLoraine@slideshare.net(AnnLoraine) Em pcr 16x9 AnnLoraine Describes using emulsion PCR to decorate Ion Sphere Particles (beads) with library molecules for Ion Torrent PGM sequencing. This is from a class Ann taught on Genomic Biotechnology. <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/empcr-16x9-151112214026-lva1-app6892-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> Describes using emulsion PCR to decorate Ion Sphere Particles (beads) with library molecules for Ion Torrent PGM sequencing. This is from a class Ann taught on Genomic Biotechnology.
Em pcr 16x9 from Ann Loraine
]]> 3123 7 https://cdn.slidesharecdn.com/ss_thumbnails/empcr-16x9-151112214026-lva1-app6892-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Arrays and alternative splicing /slideshow/affyme/49269233 reanal-150611132711-lva1-app6892
This poster presented at ISMB in 2005 describes using Affymetrix 3-prime arrays to investigate alternative splicing in the mouse genome.]]>
This poster presented at ISMB in 2005 describes using Affymetrix 3-prime arrays to investigate alternative splicing in the mouse genome.]]> Thu, 11 Jun 2015 13:27:11 GMT /slideshow/affyme/49269233 AnnLoraine@slideshare.net(AnnLoraine) Arrays and alternative splicing AnnLoraine This poster presented at ISMB in 2005 describes using Affymetrix 3-prime arrays to investigate alternative splicing in the mouse genome. <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/reanal-150611132711-lva1-app6892-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> This poster presented at ISMB in 2005 describes using Affymetrix 3-prime arrays to investigate alternative splicing in the mouse genome.
Arrays and alternative splicing from Ann Loraine
]]> 764 1 https://cdn.slidesharecdn.com/ss_thumbnails/reanal-150611132711-lva1-app6892-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Visualizing the genome: Techniques for presenting genome data and annotations /slideshow/visismb-2002/49268525 vis-150611131333-lva1-app6891
Poster presented at ISMB 2002. Examples from the Neomorphic Annotation Station, an early version of Integrated Genome Browser, and ProtAnnot, an alternative splicing protein domain viewer, illustrate visualization techniques for genome browsers.]]>
Poster presented at ISMB 2002. Examples from the Neomorphic Annotation Station, an early version of Integrated Genome Browser, and ProtAnnot, an alternative splicing protein domain viewer, illustrate visualization techniques for genome browsers.]]> Thu, 11 Jun 2015 13:13:33 GMT /slideshow/visismb-2002/49268525 AnnLoraine@slideshare.net(AnnLoraine) Visualizing the genome: Techniques for presenting genome data and annotations AnnLoraine Poster presented at ISMB 2002. Examples from the Neomorphic Annotation Station, an early version of Integrated Genome Browser, and ProtAnnot, an alternative splicing protein domain viewer, illustrate visualization techniques for genome browsers. <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/vis-150611131333-lva1-app6891-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> Poster presented at ISMB 2002. Examples from the Neomorphic Annotation Station, an early version of Integrated Genome Browser, and ProtAnnot, an alternative splicing protein domain viewer, illustrate visualization techniques for genome browsers.
Visualizing the genome: Techniques for presenting genome data and annotations from Ann Loraine
]]> 314 1 https://cdn.slidesharecdn.com/ss_thumbnails/vis-150611131333-lva1-app6891-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 wings2014 Workshop 1 Design, sequence, align, count, visualize /slideshow/wings2014-workshop-1-design-sequence-align-count-visualize/36562315 workshop1-140702125809-phpapp02
際際滷s from Workshop 1 of wings 2014]]>
際際滷s from Workshop 1 of wings 2014]]> Wed, 02 Jul 2014 12:58:09 GMT /slideshow/wings2014-workshop-1-design-sequence-align-count-visualize/36562315 AnnLoraine@slideshare.net(AnnLoraine) wings2014 Workshop 1 Design, sequence, align, count, visualize AnnLoraine 際際滷s from Workshop 1 of wings 2014 <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/workshop1-140702125809-phpapp02-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> 際際滷s from Workshop 1 of wings 2014
wings2014 Workshop 1 Design, sequence, align, count, visualize from Ann Loraine
]]> 3239 5 https://cdn.slidesharecdn.com/ss_thumbnails/workshop1-140702125809-phpapp02-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 WiNGS 2014 Workshop 2 R, RStudio, and reproducible research with knitr /slideshow/rnaseq-data-analysis-at-wings-2014-workshop-3-biological-interpretation-36562183/36562183 workshop2-140702125432-phpapp02
際際滷s from Workshop 2 of Workshop in Next-Generation Science held at UNC Charlotte City Center Campus in May 2014]]>
際際滷s from Workshop 2 of Workshop in Next-Generation Science held at UNC Charlotte City Center Campus in May 2014]]> Wed, 02 Jul 2014 12:54:32 GMT /slideshow/rnaseq-data-analysis-at-wings-2014-workshop-3-biological-interpretation-36562183/36562183 AnnLoraine@slideshare.net(AnnLoraine) WiNGS 2014 Workshop 2 R, RStudio, and reproducible research with knitr AnnLoraine 際際滷s from Workshop 2 of Workshop in Next-Generation Science held at UNC Charlotte City Center Campus in May 2014 <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/workshop2-140702125432-phpapp02-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> 際際滷s from Workshop 2 of Workshop in Next-Generation Science held at UNC Charlotte City Center Campus in May 2014
WiNGS 2014 Workshop 2 R, RStudio, and reproducible research with knitr from Ann Loraine
]]> 1250 4 https://cdn.slidesharecdn.com/ss_thumbnails/workshop2-140702125432-phpapp02-thumbnail.jpg?width=120&height=120&fit=bounds presentation White http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 RNA-Seq data analysis at wings 2014 - Workshop 3 Biological Interpretation /slideshow/rnaseq-data-analysis-at-wings-2014-workshop-3-biological-interpretation/36561354 workshop3-140702122921-phpapp01
際際滷s from Workshop 3 of WiNGs Conference held at the UNC Charlotte City Center campus in May 2014. ]]>
際際滷s from Workshop 3 of WiNGs Conference held at the UNC Charlotte City Center campus in May 2014. ]]> Wed, 02 Jul 2014 12:29:21 GMT /slideshow/rnaseq-data-analysis-at-wings-2014-workshop-3-biological-interpretation/36561354 AnnLoraine@slideshare.net(AnnLoraine) RNA-Seq data analysis at wings 2014 - Workshop 3 Biological Interpretation AnnLoraine 際際滷s from Workshop 3 of WiNGs Conference held at the UNC Charlotte City Center campus in May 2014. <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/workshop3-140702122921-phpapp01-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> 際際滷s from Workshop 3 of WiNGs Conference held at the UNC Charlotte City Center campus in May 2014.
RNA-Seq data analysis at wings 2014 - Workshop 3 Biological Interpretation from Ann Loraine
]]> 1333 4 https://cdn.slidesharecdn.com/ss_thumbnails/workshop3-140702122921-phpapp01-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Linking IGB with Galaxy /slideshow/linking-integrated-genome-browser-with-galaxy-poster-from-galaxy-com/36560435 loraine-galaxyposter-140702120417-phpapp02
Linking Integrated Genome Browser with Galaxy - Poster from Galaxy Community Conference 2014 at Johns Hopkins in Baltimore]]>
Linking Integrated Genome Browser with Galaxy - Poster from Galaxy Community Conference 2014 at Johns Hopkins in Baltimore]]> Wed, 02 Jul 2014 12:04:17 GMT /slideshow/linking-integrated-genome-browser-with-galaxy-poster-from-galaxy-com/36560435 AnnLoraine@slideshare.net(AnnLoraine) Linking IGB with Galaxy AnnLoraine Linking Integrated Genome Browser with Galaxy - Poster from Galaxy Community Conference 2014 at Johns Hopkins in Baltimore <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/loraine-galaxyposter-140702120417-phpapp02-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> Linking Integrated Genome Browser with Galaxy - Poster from Galaxy Community Conference 2014 at Johns Hopkins in Baltimore
Linking IGB with Galaxy from Ann Loraine
]]> 1238 4 https://cdn.slidesharecdn.com/ss_thumbnails/loraine-galaxyposter-140702120417-phpapp02-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 IGB genome genometry data models by Gregg Helt and Cyrus Harmon /slideshow/igb-data-models-by-gregg-helt/33650967 genometry12-2002-140417105851-phpapp01
These slides were developed by Gregg Helt and Cyrus Harmon to explain the core data models in Integrated Genome Browser. The goal was to make translation between protein, transcript, and genome coordinate systems easier and more powerful. These data models are what makes IGB capable of correctly displaying probes that are split across intron boundaries. They also form the core of the ProtAnnot application, that displays protein domains mapped onto genomic sequence. ]]>
These slides were developed by Gregg Helt and Cyrus Harmon to explain the core data models in Integrated Genome Browser. The goal was to make translation between protein, transcript, and genome coordinate systems easier and more powerful. These data models are what makes IGB capable of correctly displaying probes that are split across intron boundaries. They also form the core of the ProtAnnot application, that displays protein domains mapped onto genomic sequence. ]]> Thu, 17 Apr 2014 10:58:51 GMT /slideshow/igb-data-models-by-gregg-helt/33650967 AnnLoraine@slideshare.net(AnnLoraine) IGB genome genometry data models by Gregg Helt and Cyrus Harmon AnnLoraine These slides were developed by Gregg Helt and Cyrus Harmon to explain the core data models in Integrated Genome Browser. The goal was to make translation between protein, transcript, and genome coordinate systems easier and more powerful. These data models are what makes IGB capable of correctly displaying probes that are split across intron boundaries. They also form the core of the ProtAnnot application, that displays protein domains mapped onto genomic sequence. <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/genometry12-2002-140417105851-phpapp01-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> These slides were developed by Gregg Helt and Cyrus Harmon to explain the core data models in Integrated Genome Browser. The goal was to make translation between protein, transcript, and genome coordinate systems easier and more powerful. These data models are what makes IGB capable of correctly displaying probes that are split across intron boundaries. They also form the core of the ProtAnnot application, that displays protein domains mapped onto genomic sequence.
IGB genome genometry data models by Gregg Helt and Cyrus Harmon from Ann Loraine
]]> 687 2 https://cdn.slidesharecdn.com/ss_thumbnails/genometry12-2002-140417105851-phpapp01-thumbnail.jpg?width=120&height=120&fit=bounds presentation White http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 RNA-Seq analysis of blueberry fruit identifies candidate genes involved in ripening and secondary metabolism /slideshow/rnaseq-analysis-of-blueberry-fruit-identifies-candidate-genes-involved-in-ripening-and-secondary-metabolism/30300722 loraineblueberrypag2014-140122075443-phpapp01
I presented these slides at the Plant Metabolic Network workshop held at the Plant Animal Genome Conference (PAG) XXII, January, 2014. The main goals of the talk were to describe RNA-Seq based annotation of a blueberry genome assembly and explain how we used PlantCyc enzyme data to associate blueberry genes with metabolic pathways. ]]>
I presented these slides at the Plant Metabolic Network workshop held at the Plant Animal Genome Conference (PAG) XXII, January, 2014. The main goals of the talk were to describe RNA-Seq based annotation of a blueberry genome assembly and explain how we used PlantCyc enzyme data to associate blueberry genes with metabolic pathways. ]]> Wed, 22 Jan 2014 07:54:42 GMT /slideshow/rnaseq-analysis-of-blueberry-fruit-identifies-candidate-genes-involved-in-ripening-and-secondary-metabolism/30300722 AnnLoraine@slideshare.net(AnnLoraine) RNA-Seq analysis of blueberry fruit identifies candidate genes involved in ripening and secondary metabolism AnnLoraine I presented these slides at the Plant Metabolic Network workshop held at the Plant Animal Genome Conference (PAG) XXII, January, 2014. The main goals of the talk were to describe RNA-Seq based annotation of a blueberry genome assembly and explain how we used PlantCyc enzyme data to associate blueberry genes with metabolic pathways. <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/loraineblueberrypag2014-140122075443-phpapp01-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> I presented these slides at the Plant Metabolic Network workshop held at the Plant Animal Genome Conference (PAG) XXII, January, 2014. The main goals of the talk were to describe RNA-Seq based annotation of a blueberry genome assembly and explain how we used PlantCyc enzyme data to associate blueberry genes with metabolic pathways.
RNA-Seq analysis of blueberry fruit identifies candidate genes involved in ripening and secondary metabolism from Ann Loraine
]]> 4418 8 https://cdn.slidesharecdn.com/ss_thumbnails/loraineblueberrypag2014-140122075443-phpapp01-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 https://cdn.slidesharecdn.com/profile-photo-AnnLoraine-48x48.jpg?cb=1582964281 https://cdn.slidesharecdn.com/ss_thumbnails/2019-03-27-mcbios-190402122316-thumbnail.jpg?width=320&height=320&fit=bounds slideshow/use-integrated-genome-browser-to-explore-analyze-and-publish-genomic-data/139231716 Use Integrated Genome ... https://cdn.slidesharecdn.com/ss_thumbnails/2018-02-08-igb-for-personalis-180209155659-thumbnail.jpg?width=320&height=320&fit=bounds slideshow/visualize-genomes-with-integrated-genome-browser/87646920 Visualize genomes with... https://cdn.slidesharecdn.com/ss_thumbnails/dataanalysisreporthowto-180102165530-thumbnail.jpg?width=320&height=320&fit=bounds slideshow/binf-3121-data-analysis-report-howto-85604058/85604058 BINF 3121 Data Analysi...