際際滷shows by User: altunaakalin / http://www.slideshare.net/images/logo.gif 際際滷shows by User: altunaakalin / Wed, 17 Feb 2021 12:51:17 GMT 際際滷Share feed for 際際滷shows by User: altunaakalin Deep learning-based cancer patient stratification /altunaakalin/deep-learningbased-cancer-patient-stratification arcastrimolecularcongress-210217125117
presenting methods for stratify cancer patients using deep learning and multi-omics (transcriptome, genome, epigenome, etc.)]]>
presenting methods for stratify cancer patients using deep learning and multi-omics (transcriptome, genome, epigenome, etc.)]]> Wed, 17 Feb 2021 12:51:17 GMT /altunaakalin/deep-learningbased-cancer-patient-stratification altunaakalin@slideshare.net(altunaakalin) Deep learning-based cancer patient stratification altunaakalin presenting methods for stratify cancer patients using deep learning and multi-omics (transcriptome, genome, epigenome, etc.) <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/arcastrimolecularcongress-210217125117-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> presenting methods for stratify cancer patients using deep learning and multi-omics (transcriptome, genome, epigenome, etc.)
Deep learning-based cancer patient stratification from Altuna Akalin
]]> 518 0 https://cdn.slidesharecdn.com/ss_thumbnails/arcastrimolecularcongress-210217125117-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Data analysis patterns, tools and data types in genomics /slideshow/data-analysis-patterns-tools-and-data-types-in-genomics/128175126 datatypesanalysistoolsforgenomics-190116140212
Simplified introduction for data analysis tasks in genomics ]]>
Simplified introduction for data analysis tasks in genomics ]]> Wed, 16 Jan 2019 14:02:12 GMT /slideshow/data-analysis-patterns-tools-and-data-types-in-genomics/128175126 altunaakalin@slideshare.net(altunaakalin) Data analysis patterns, tools and data types in genomics altunaakalin Simplified introduction for data analysis tasks in genomics <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/datatypesanalysistoolsforgenomics-190116140212-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> Simplified introduction for data analysis tasks in genomics
Data analysis patterns, tools and data types in genomics from Altuna Akalin
]]> 721 4 https://cdn.slidesharecdn.com/ss_thumbnails/datatypesanalysistoolsforgenomics-190116140212-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 computational genomics course 2018 berlin /altunaakalin/computational-genomics-course-2018-berlin compgen2018a3b-171024200612
computational genomics course at MDC-Berlin]]>
computational genomics course at MDC-Berlin]]> Tue, 24 Oct 2017 20:06:12 GMT /altunaakalin/computational-genomics-course-2018-berlin altunaakalin@slideshare.net(altunaakalin) computational genomics course 2018 berlin altunaakalin computational genomics course at MDC-Berlin <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/compgen2018a3b-171024200612-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> computational genomics course at MDC-Berlin
computational genomics course 2018 berlin from Altuna Akalin
]]> 13067 5 https://cdn.slidesharecdn.com/ss_thumbnails/compgen2018a3b-171024200612-thumbnail.jpg?width=120&height=120&fit=bounds document Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Computational genomics and RNA biology summer school | Berlin /slideshow/computational-genomics-and-rna-biology-summer-school-berlin/76767168 denbirbccompgen2017poster-170608134502
Computational genomics and RNA biology summer school | Berlin, application deadline: july 1st, 2017]]>
Computational genomics and RNA biology summer school | Berlin, application deadline: july 1st, 2017]]> Thu, 08 Jun 2017 13:45:01 GMT /slideshow/computational-genomics-and-rna-biology-summer-school-berlin/76767168 altunaakalin@slideshare.net(altunaakalin) Computational genomics and RNA biology summer school | Berlin altunaakalin Computational genomics and RNA biology summer school | Berlin, application deadline: july 1st, 2017 <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/denbirbccompgen2017poster-170608134502-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> Computational genomics and RNA biology summer school | Berlin, application deadline: july 1st, 2017
Computational genomics and RNA biology summer school | Berlin from Altuna Akalin
]]> 448 4 https://cdn.slidesharecdn.com/ss_thumbnails/denbirbccompgen2017poster-170608134502-thumbnail.jpg?width=120&height=120&fit=bounds document Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Epigenetic dysregulation talk at NGSAsia 2016 /slideshow/epigenetic-dysregulation-talk-at-ngsasia-2016/67025875 ngsasia2016altunaakalin-161011185226
Epigenetic dysregulation in cancer and strategies for analyzing bisulfite-seq data]]>
Epigenetic dysregulation in cancer and strategies for analyzing bisulfite-seq data]]> Tue, 11 Oct 2016 18:52:26 GMT /slideshow/epigenetic-dysregulation-talk-at-ngsasia-2016/67025875 altunaakalin@slideshare.net(altunaakalin) Epigenetic dysregulation talk at NGSAsia 2016 altunaakalin Epigenetic dysregulation in cancer and strategies for analyzing bisulfite-seq data <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/ngsasia2016altunaakalin-161011185226-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> Epigenetic dysregulation in cancer and strategies for analyzing bisulfite-seq data
Epigenetic dysregulation talk at NGSAsia 2016 from Altuna Akalin
]]> 746 4 https://cdn.slidesharecdn.com/ss_thumbnails/ngsasia2016altunaakalin-161011185226-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 BIMSB/MDC Bioinformatics Platform Overview /slideshow/bimsbmdc-bioinformatics-platform-overview/65710882 bioinfoplatfomstatus-160905191102
Info on Bioinformatics Platform at MDC/BIMSB, Berlin]]>
Info on Bioinformatics Platform at MDC/BIMSB, Berlin]]> Mon, 05 Sep 2016 19:11:02 GMT /slideshow/bimsbmdc-bioinformatics-platform-overview/65710882 altunaakalin@slideshare.net(altunaakalin) BIMSB/MDC Bioinformatics Platform Overview altunaakalin Info on Bioinformatics Platform at MDC/BIMSB, Berlin <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/bioinfoplatfomstatus-160905191102-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> Info on Bioinformatics Platform at MDC/BIMSB, Berlin
BIMSB/MDC Bioinformatics Platform Overview from Altuna Akalin
]]> 521 3 https://cdn.slidesharecdn.com/ss_thumbnails/bioinfoplatfomstatus-160905191102-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Computational genomics approaches to precision medicine /slideshow/computational-genomics-approaches-to-precision-medicine/59772876 genprecmedposterversion14-160319203356
hands-on course on data analysis. http://compgen2016.mdc-berlin.de]]>
hands-on course on data analysis. http://compgen2016.mdc-berlin.de]]> Sat, 19 Mar 2016 20:33:56 GMT /slideshow/computational-genomics-approaches-to-precision-medicine/59772876 altunaakalin@slideshare.net(altunaakalin) Computational genomics approaches to precision medicine altunaakalin hands-on course on data analysis. http://compgen2016.mdc-berlin.de <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/genprecmedposterversion14-160319203356-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> hands-on course on data analysis. http://compgen2016.mdc-berlin.de
Computational genomics approaches to precision medicine from Altuna Akalin
]]> 14885 4 https://cdn.slidesharecdn.com/ss_thumbnails/genprecmedposterversion14-160319203356-thumbnail.jpg?width=120&height=120&fit=bounds document Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Bimsb bioinfo hackathon 2015 /slideshow/bimsb-bioinfo-hackathon-2015/50249608 bimsbbioinfohackathon2015-150707101400-lva1-app6892
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]]> Tue, 07 Jul 2015 10:14:00 GMT /slideshow/bimsb-bioinfo-hackathon-2015/50249608 altunaakalin@slideshare.net(altunaakalin) Bimsb bioinfo hackathon 2015 altunaakalin <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/bimsbbioinfohackathon2015-150707101400-lva1-app6892-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br>
Bimsb bioinfo hackathon 2015 from Altuna Akalin
]]> 8313 4 https://cdn.slidesharecdn.com/ss_thumbnails/bimsbbioinfohackathon2015-150707101400-lva1-app6892-thumbnail.jpg?width=120&height=120&fit=bounds document Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Computational genomics course poster 2015 (BIMSB/MDC-Berlin) /slideshow/compgen-poster-2015dlow/46488178 compgenposter2015dlow-150331062707-conversion-gate01
2015 Computational genomics course poster. There will be theoretical lectures followed by practical session where students apply what they learned. The programming will be mainly done in R. The course will be beneficial for first year computational biology PhD students or experimental biologists who want to start data analysis or seeking a better understanding of computational genomics.]]>
2015 Computational genomics course poster. There will be theoretical lectures followed by practical session where students apply what they learned. The programming will be mainly done in R. The course will be beneficial for first year computational biology PhD students or experimental biologists who want to start data analysis or seeking a better understanding of computational genomics.]]> Tue, 31 Mar 2015 06:27:06 GMT /slideshow/compgen-poster-2015dlow/46488178 altunaakalin@slideshare.net(altunaakalin) Computational genomics course poster 2015 (BIMSB/MDC-Berlin) altunaakalin 2015 Computational genomics course poster. There will be theoretical lectures followed by practical session where students apply what they learned. The programming will be mainly done in R. The course will be beneficial for first year computational biology PhD students or experimental biologists who want to start data analysis or seeking a better understanding of computational genomics. <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/compgenposter2015dlow-150331062707-conversion-gate01-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> 2015 Computational genomics course poster. There will be theoretical lectures followed by practical session where students apply what they learned. The programming will be mainly done in R. The course will be beneficial for first year computational biology PhD students or experimental biologists who want to start data analysis or seeking a better understanding of computational genomics.
Computational genomics course poster 2015 (BIMSB/MDC-Berlin) from Altuna Akalin
]]> 14189 4 https://cdn.slidesharecdn.com/ss_thumbnails/compgenposter2015dlow-150331062707-conversion-gate01-thumbnail.jpg?width=120&height=120&fit=bounds document Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 genomation: summary of genomic intervals /slideshow/genomation-presentation-at-fmi/31361153 genomationpres19feb2014-140218172638-phpapp02
an R package that contains a collection of tools for visualizing and analyzing genome-wide data sets. The package works with a variety of genomic interval file types and enables easy summarization and annotation of high throughput data sets with given genomic annotations. http://al2na.github.io/genomation/]]>
an R package that contains a collection of tools for visualizing and analyzing genome-wide data sets. The package works with a variety of genomic interval file types and enables easy summarization and annotation of high throughput data sets with given genomic annotations. http://al2na.github.io/genomation/]]> Tue, 18 Feb 2014 17:26:38 GMT /slideshow/genomation-presentation-at-fmi/31361153 altunaakalin@slideshare.net(altunaakalin) genomation: summary of genomic intervals altunaakalin an R package that contains a collection of tools for visualizing and analyzing genome-wide data sets. The package works with a variety of genomic interval file types and enables easy summarization and annotation of high throughput data sets with given genomic annotations. http://al2na.github.io/genomation/ <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/genomationpres19feb2014-140218172638-phpapp02-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> an R package that contains a collection of tools for visualizing and analyzing genome-wide data sets. The package works with a variety of genomic interval file types and enables easy summarization and annotation of high throughput data sets with given genomic annotations. http://al2na.github.io/genomation/
genomation: summary of genomic intervals from Altuna Akalin
]]> 10429 3 https://cdn.slidesharecdn.com/ss_thumbnails/genomationpres19feb2014-140218172638-phpapp02-thumbnail.jpg?width=120&height=120&fit=bounds presentation White http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 DNA methylation analysis in R /slideshow/dna-methylation-analysis-in-r/17373868 methylkittutorialslides2013-130319125016-phpapp02
Tutorial for analyzing DNA methylation data from bisulfite sequencing with R]]>
Tutorial for analyzing DNA methylation data from bisulfite sequencing with R]]> Tue, 19 Mar 2013 12:50:16 GMT /slideshow/dna-methylation-analysis-in-r/17373868 altunaakalin@slideshare.net(altunaakalin) DNA methylation analysis in R altunaakalin Tutorial for analyzing DNA methylation data from bisulfite sequencing with R <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/methylkittutorialslides2013-130319125016-phpapp02-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> Tutorial for analyzing DNA methylation data from bisulfite sequencing with R
DNA methylation analysis in R from Altuna Akalin
]]> 28005 11 https://cdn.slidesharecdn.com/ss_thumbnails/methylkittutorialslides2013-130319125016-phpapp02-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Analyzing RRBS methylation data /slideshow/analyzing-rrbs-methylation-data/11681735 methylkittutorialslidesfeb2012-120220193226-phpapp01
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]]> Mon, 20 Feb 2012 19:32:23 GMT /slideshow/analyzing-rrbs-methylation-data/11681735 altunaakalin@slideshare.net(altunaakalin) Analyzing RRBS methylation data altunaakalin <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/methylkittutorialslidesfeb2012-120220193226-phpapp01-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br>
Analyzing RRBS methylation data from Altuna Akalin
]]> 10800 11 https://cdn.slidesharecdn.com/ss_thumbnails/methylkittutorialslidesfeb2012-120220193226-phpapp01-thumbnail.jpg?width=120&height=120&fit=bounds presentation White http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 https://cdn.slidesharecdn.com/profile-photo-altunaakalin-48x48.jpg?cb=1613566151 I am working on computational genomics of cancer. Particularly, I am developing methods for DNA methylation analysis, RNA-seq analysis and integration of high-throughput genomics datasets. My other general interests are as follows: - Gene regulation and gene regulatory networks in disease - DNA sequencing analysis and its applications to genome biology - Highly conserved elements and their regulatory function - Transcription factor binding site prediction and related algorithms - Application of machine learning methods to biological problems bioinformatics.mdc-berlin.de/ https://cdn.slidesharecdn.com/ss_thumbnails/arcastrimolecularcongress-210217125117-thumbnail.jpg?width=320&height=320&fit=bounds altunaakalin/deep-learningbased-cancer-patient-stratification Deep learning-based ca... https://cdn.slidesharecdn.com/ss_thumbnails/datatypesanalysistoolsforgenomics-190116140212-thumbnail.jpg?width=320&height=320&fit=bounds slideshow/data-analysis-patterns-tools-and-data-types-in-genomics/128175126 Data analysis patterns... https://cdn.slidesharecdn.com/ss_thumbnails/compgen2018a3b-171024200612-thumbnail.jpg?width=320&height=320&fit=bounds altunaakalin/computational-genomics-course-2018-berlin computational genomics...