際際滷shows by User: cmungall / http://www.slideshare.net/images/logo.gif 際際滷shows by User: cmungall / Sun, 19 Feb 2023 17:30:46 GMT 際際滷Share feed for 際際滷shows by User: cmungall MADICES Mungall 2022.pptx /slideshow/madices-mungall-2022pptx/255921916 madicesmungall2022-230219173046-568649f1
Demonstration of the applicability of the Linked Data Modeling Language and CHEMROF ( https://chemkg.github.io/chemrof/) for semantic chemical sciences. Presented at MADICES 2022. https://github.com/MADICES/MADICES-2022]]>
Demonstration of the applicability of the Linked Data Modeling Language and CHEMROF ( https://chemkg.github.io/chemrof/) for semantic chemical sciences. Presented at MADICES 2022. https://github.com/MADICES/MADICES-2022]]> Sun, 19 Feb 2023 17:30:46 GMT /slideshow/madices-mungall-2022pptx/255921916 cmungall@slideshare.net(cmungall) MADICES Mungall 2022.pptx cmungall Demonstration of the applicability of the Linked Data Modeling Language and CHEMROF ( https://chemkg.github.io/chemrof/) for semantic chemical sciences. Presented at MADICES 2022. https://github.com/MADICES/MADICES-2022 <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/madicesmungall2022-230219173046-568649f1-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> Demonstration of the applicability of the Linked Data Modeling Language and CHEMROF ( https://chemkg.github.io/chemrof/) for semantic chemical sciences. Presented at MADICES 2022. https://github.com/MADICES/MADICES-2022
MADICES Mungall 2022.pptx from Chris Mungall
]]> 25 0 https://cdn.slidesharecdn.com/ss_thumbnails/madicesmungall2022-230219173046-568649f1-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Scaling up semantics; lessons learned across the life sciences /slideshow/scaling-up-semantics-lessons-learned-across-the-life-sciences/255921622 mungall-swat4hcls-2023-230219165406-834b3316
Semantic modeling is key to understanding the biological processes underpinning the health of humans and the health of ecosystems on this planet. There are a number of different approaches to semantic modeling, varying from modeling of *things* in the form of knowledge graphs, modeling of *data structures* in the form of semantic schemas, and modeling of *words* in the form of ultra-large language models. Taking the metaphor of modeling paradigms as planets in a semantic solar system, I will take us on a tour through the solar system, exploring the strengths of each approach, and looking through a historic lens at how we keep iterating over similar solutions with each rotation around the sun. As an alternative to the dichotomy of either resisting change, or starting afresh I urge an approach were we embrace change and adapt with each revolution. I will look specifically at how the OBO community have built powerful knowledge graphs of biological concepts, how the LinkML modeling language incorporates aspects of both frame languages and shape languages, and how language models can be integrated with semantic ontological approaches through the OntoGPT framework]]>
Semantic modeling is key to understanding the biological processes underpinning the health of humans and the health of ecosystems on this planet. There are a number of different approaches to semantic modeling, varying from modeling of *things* in the form of knowledge graphs, modeling of *data structures* in the form of semantic schemas, and modeling of *words* in the form of ultra-large language models. Taking the metaphor of modeling paradigms as planets in a semantic solar system, I will take us on a tour through the solar system, exploring the strengths of each approach, and looking through a historic lens at how we keep iterating over similar solutions with each rotation around the sun. As an alternative to the dichotomy of either resisting change, or starting afresh I urge an approach were we embrace change and adapt with each revolution. I will look specifically at how the OBO community have built powerful knowledge graphs of biological concepts, how the LinkML modeling language incorporates aspects of both frame languages and shape languages, and how language models can be integrated with semantic ontological approaches through the OntoGPT framework]]> Sun, 19 Feb 2023 16:54:06 GMT /slideshow/scaling-up-semantics-lessons-learned-across-the-life-sciences/255921622 cmungall@slideshare.net(cmungall) Scaling up semantics; lessons learned across the life sciences cmungall Semantic modeling is key to understanding the biological processes underpinning the health of humans and the health of ecosystems on this planet. There are a number of different approaches to semantic modeling, varying from modeling of *things* in the form of knowledge graphs, modeling of *data structures* in the form of semantic schemas, and modeling of *words* in the form of ultra-large language models. Taking the metaphor of modeling paradigms as planets in a semantic solar system, I will take us on a tour through the solar system, exploring the strengths of each approach, and looking through a historic lens at how we keep iterating over similar solutions with each rotation around the sun. As an alternative to the dichotomy of either resisting change, or starting afresh I urge an approach were we embrace change and adapt with each revolution. I will look specifically at how the OBO community have built powerful knowledge graphs of biological concepts, how the LinkML modeling language incorporates aspects of both frame languages and shape languages, and how language models can be integrated with semantic ontological approaches through the OntoGPT framework <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/mungall-swat4hcls-2023-230219165406-834b3316-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> Semantic modeling is key to understanding the biological processes underpinning the health of humans and the health of ecosystems on this planet. There are a number of different approaches to semantic modeling, varying from modeling of *things* in the form of knowledge graphs, modeling of *data structures* in the form of semantic schemas, and modeling of *words* in the form of ultra-large language models. Taking the metaphor of modeling paradigms as planets in a semantic solar system, I will take us on a tour through the solar system, exploring the strengths of each approach, and looking through a historic lens at how we keep iterating over similar solutions with each rotation around the sun. As an alternative to the dichotomy of either resisting change, or starting afresh I urge an approach were we embrace change and adapt with each revolution. I will look specifically at how the OBO community have built powerful knowledge graphs of biological concepts, how the LinkML modeling language incorporates aspects of both frame languages and shape languages, and how language models can be integrated with semantic ontological approaches through the OntoGPT framework
Scaling up semantics; lessons learned across the life sciences from Chris Mungall
]]> 57 0 https://cdn.slidesharecdn.com/ss_thumbnails/mungall-swat4hcls-2023-230219165406-834b3316-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 LinkML Intro July 2022.pptx PLEASE VIEW THIS ON ZENODO /slideshow/linkml-intro-july-2022pptx/252160895 linkmlintrojuly2022-220711153806-ce994df9
NOTE THAT I HAVE MOVED AWAY FROM SLIDESHARE TO ZENODO The identical presentation is now here: https://doi.org/10.5281/zenodo.7778641 General introduction to LinkML, The Linked Data Modeling Language. Adapter from presentation given to NIH May 2022 https://linkml.io/linkml]]>
NOTE THAT I HAVE MOVED AWAY FROM SLIDESHARE TO ZENODO The identical presentation is now here: https://doi.org/10.5281/zenodo.7778641 General introduction to LinkML, The Linked Data Modeling Language. Adapter from presentation given to NIH May 2022 https://linkml.io/linkml]]> Mon, 11 Jul 2022 15:38:06 GMT /slideshow/linkml-intro-july-2022pptx/252160895 cmungall@slideshare.net(cmungall) LinkML Intro July 2022.pptx PLEASE VIEW THIS ON ZENODO cmungall NOTE THAT I HAVE MOVED AWAY FROM SLIDESHARE TO ZENODO The identical presentation is now here: https://doi.org/10.5281/zenodo.7778641 General introduction to LinkML, The Linked Data Modeling Language. Adapter from presentation given to NIH May 2022 https://linkml.io/linkml <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/linkmlintrojuly2022-220711153806-ce994df9-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> NOTE THAT I HAVE MOVED AWAY FROM SLIDESHARE TO ZENODO The identical presentation is now here: https://doi.org/10.5281/zenodo.7778641 General introduction to LinkML, The Linked Data Modeling Language. Adapter from presentation given to NIH May 2022 https://linkml.io/linkml
LinkML Intro July 2022.pptx PLEASE VIEW THIS ON ZENODO from Chris Mungall
]]> 5761 0 https://cdn.slidesharecdn.com/ss_thumbnails/linkmlintrojuly2022-220711153806-ce994df9-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Ontology Access Kit_ Workshop Intro 際際滷s.pptx /slideshow/ontology-access-kit-workshop-intro-slidespptx/252160833 ontologyaccesskitworkshopintroslides-220711152630-1941b235
際際滷s from the Ontology Access Kit (OAK) workshop, https://incatools.github.io/ontology-access-kit/ OAK is a pluralistic Python library for accessing a variety of ontologies, using either the command line or the Python library]]>
際際滷s from the Ontology Access Kit (OAK) workshop, https://incatools.github.io/ontology-access-kit/ OAK is a pluralistic Python library for accessing a variety of ontologies, using either the command line or the Python library]]> Mon, 11 Jul 2022 15:26:30 GMT /slideshow/ontology-access-kit-workshop-intro-slidespptx/252160833 cmungall@slideshare.net(cmungall) Ontology Access Kit_ Workshop Intro 際際滷s.pptx cmungall 際際滷s from the Ontology Access Kit (OAK) workshop, https://incatools.github.io/ontology-access-kit/ OAK is a pluralistic Python library for accessing a variety of ontologies, using either the command line or the Python library <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/ontologyaccesskitworkshopintroslides-220711152630-1941b235-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> 際際滷s from the Ontology Access Kit (OAK) workshop, https://incatools.github.io/ontology-access-kit/ OAK is a pluralistic Python library for accessing a variety of ontologies, using either the command line or the Python library
Ontology Access Kit_ Workshop Intro 際際滷s.pptx from Chris Mungall
]]> 141 0 https://cdn.slidesharecdn.com/ss_thumbnails/ontologyaccesskitworkshopintroslides-220711152630-1941b235-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 LinkML Intro (for Monarch devs) /slideshow/linkml-intro-for-monarch-devs/250471004 linkml-for-monarch-211018192230
Introduction to LinkML given to Monarch Initiative members]]>
Introduction to LinkML given to Monarch Initiative members]]> Mon, 18 Oct 2021 19:22:29 GMT /slideshow/linkml-intro-for-monarch-devs/250471004 cmungall@slideshare.net(cmungall) LinkML Intro (for Monarch devs) cmungall Introduction to LinkML given to Monarch Initiative members <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/linkml-for-monarch-211018192230-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> Introduction to LinkML given to Monarch Initiative members
LinkML Intro (for Monarch devs) from Chris Mungall
]]> 137 0 https://cdn.slidesharecdn.com/ss_thumbnails/linkml-for-monarch-211018192230-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 LinkML presentation to Yosemite Group /slideshow/linkml-presentation-to-yosemite-group/250470997 linkmlyosemitepresentation-211018192042
March 2021 presentation from Harold Solbrig and Chris Mungall to Yosemite RDF group]]>
March 2021 presentation from Harold Solbrig and Chris Mungall to Yosemite RDF group]]> Mon, 18 Oct 2021 19:20:42 GMT /slideshow/linkml-presentation-to-yosemite-group/250470997 cmungall@slideshare.net(cmungall) LinkML presentation to Yosemite Group cmungall March 2021 presentation from Harold Solbrig and Chris Mungall to Yosemite RDF group <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/linkmlyosemitepresentation-211018192042-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> March 2021 presentation from Harold Solbrig and Chris Mungall to Yosemite RDF group
LinkML presentation to Yosemite Group from Chris Mungall
]]> 191 0 https://cdn.slidesharecdn.com/ss_thumbnails/linkmlyosemitepresentation-211018192042-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Experiences in the biosciences with the open biological ontologies foundry and the gene ontology /slideshow/experiences-in-the-biosciences-with-the-open-biological-ontologies-foundry-and-the-gene-ontology/250470982 omdiexperiencesinthebioscienceswiththeopenbiologicalontologiesfoundryandthegeneontology-211018191342
Closing talk for OMDI (Ontologies for Materials Database Interoperability) 2021. Also recorded here: OMDI 2021]]>
Closing talk for OMDI (Ontologies for Materials Database Interoperability) 2021. Also recorded here: OMDI 2021]]> Mon, 18 Oct 2021 19:13:41 GMT /slideshow/experiences-in-the-biosciences-with-the-open-biological-ontologies-foundry-and-the-gene-ontology/250470982 cmungall@slideshare.net(cmungall) Experiences in the biosciences with the open biological ontologies foundry and the gene ontology cmungall Closing talk for OMDI (Ontologies for Materials Database Interoperability) 2021. Also recorded here: OMDI 2021 <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/omdiexperiencesinthebioscienceswiththeopenbiologicalontologiesfoundryandthegeneontology-211018191342-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> Closing talk for OMDI (Ontologies for Materials Database Interoperability) 2021. Also recorded here: OMDI 2021
Experiences in the biosciences with the open biological ontologies foundry and the gene ontology from Chris Mungall
]]> 449 0 https://cdn.slidesharecdn.com/ss_thumbnails/omdiexperiencesinthebioscienceswiththeopenbiologicalontologiesfoundryandthegeneontology-211018191342-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 All together now: piecing together the knowledge graph of life /slideshow/all-together-now-piecing-together-the-knowledge-graph-of-life/250470964 alltogethernowpiecingtogethertheknowledgegraphoflife-211018190509
Keynote Presentation from International Conference on Biomedical Ontologies 2021]]>
Keynote Presentation from International Conference on Biomedical Ontologies 2021]]> Mon, 18 Oct 2021 19:05:08 GMT /slideshow/all-together-now-piecing-together-the-knowledge-graph-of-life/250470964 cmungall@slideshare.net(cmungall) All together now: piecing together the knowledge graph of life cmungall Keynote Presentation from International Conference on Biomedical Ontologies 2021 <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/alltogethernowpiecingtogethertheknowledgegraphoflife-211018190509-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> Keynote Presentation from International Conference on Biomedical Ontologies 2021
All together now: piecing together the knowledge graph of life from Chris Mungall
]]> 152 0 https://cdn.slidesharecdn.com/ss_thumbnails/alltogethernowpiecingtogethertheknowledgegraphoflife-211018190509-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Collaboratively Creating the Knowledge Graph of Life /slideshow/collaboratively-creating-the-knowledge-graph-of-life/249581612 obographgangtalk1-210702223118
Overview of collaborative projects in the life sciences building out the necessary ontologies, schemas, and knowledge graphs for describing biological knowledge]]>
Overview of collaborative projects in the life sciences building out the necessary ontologies, schemas, and knowledge graphs for describing biological knowledge]]> Fri, 02 Jul 2021 22:31:18 GMT /slideshow/collaboratively-creating-the-knowledge-graph-of-life/249581612 cmungall@slideshare.net(cmungall) Collaboratively Creating the Knowledge Graph of Life cmungall Overview of collaborative projects in the life sciences building out the necessary ontologies, schemas, and knowledge graphs for describing biological knowledge <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/obographgangtalk1-210702223118-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> Overview of collaborative projects in the life sciences building out the necessary ontologies, schemas, and knowledge graphs for describing biological knowledge
Collaboratively Creating the Knowledge Graph of Life from Chris Mungall
]]> 284 0 https://cdn.slidesharecdn.com/ss_thumbnails/obographgangtalk1-210702223118-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Representation of kidney structures in Uberon /slideshow/representation-of-kidney-structures-in-uberon/216613961 mungall-uberon-kpmp-200107165544
Presentation for KPMP Ontology Workshop Seattle July 2018 ]]>
Presentation for KPMP Ontology Workshop Seattle July 2018 ]]> Tue, 07 Jan 2020 16:55:44 GMT /slideshow/representation-of-kidney-structures-in-uberon/216613961 cmungall@slideshare.net(cmungall) Representation of kidney structures in Uberon cmungall Presentation for KPMP Ontology Workshop Seattle July 2018 <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/mungall-uberon-kpmp-200107165544-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> Presentation for KPMP Ontology Workshop Seattle July 2018
Representation of kidney structures in Uberon from Chris Mungall
]]> 214 0 https://cdn.slidesharecdn.com/ss_thumbnails/mungall-uberon-kpmp-200107165544-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 SparqlProg (BioHackathon 2019) /slideshow/sparqlprog-biohackathon-2019/168046315 sparqlprog-bh-2019-190901050119
SparqlProg: Logic Programs for the Biological Semantic Web. Presentation for BioHackathon, Fukuoka, Japan, 2019 ]]>
SparqlProg: Logic Programs for the Biological Semantic Web. Presentation for BioHackathon, Fukuoka, Japan, 2019 ]]> Sun, 01 Sep 2019 05:01:19 GMT /slideshow/sparqlprog-biohackathon-2019/168046315 cmungall@slideshare.net(cmungall) SparqlProg (BioHackathon 2019) cmungall SparqlProg: Logic Programs for the Biological Semantic Web. Presentation for BioHackathon, Fukuoka, Japan, 2019 <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/sparqlprog-bh-2019-190901050119-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> SparqlProg: Logic Programs for the Biological Semantic Web. Presentation for BioHackathon, Fukuoka, Japan, 2019
SparqlProg (BioHackathon 2019) from Chris Mungall
]]> 3090 1 https://cdn.slidesharecdn.com/ss_thumbnails/sparqlprog-bh-2019-190901050119-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Ontology Development Kit: Bio-Ontologies 2019 /cmungall/ontology-development-kit-bioontologies-2019 mungall-odk-ismb-bioontologies-2019-190724112523
Presentation on Ontology Development Kit (ODK) presented 2019-07-24 at Bio-Ontologies COSI at ISMB/ECCB 2019]]>
Presentation on Ontology Development Kit (ODK) presented 2019-07-24 at Bio-Ontologies COSI at ISMB/ECCB 2019]]> Wed, 24 Jul 2019 11:25:23 GMT /cmungall/ontology-development-kit-bioontologies-2019 cmungall@slideshare.net(cmungall) Ontology Development Kit: Bio-Ontologies 2019 cmungall Presentation on Ontology Development Kit (ODK) presented 2019-07-24 at Bio-Ontologies COSI at ISMB/ECCB 2019 <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/mungall-odk-ismb-bioontologies-2019-190724112523-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> Presentation on Ontology Development Kit (ODK) presented 2019-07-24 at Bio-Ontologies COSI at ISMB/ECCB 2019
Ontology Development Kit: Bio-Ontologies 2019 from Chris Mungall
]]> 834 5 https://cdn.slidesharecdn.com/ss_thumbnails/mungall-odk-ismb-bioontologies-2019-190724112523-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 US2TS: Reasoning over multiple open bio-ontologies to make machines and humans happy /slideshow/us2ts-reasoning-over-multiple-open-bioontologies-to-make-machines-and-humans-happy/140011741 us2ts2019-reasoningacrossobo1-190408093950
Presentation at http://us2ts.org/2019/posts/program.html in Reasoning workshop. Examples of reasoning within and across OBO ontologies]]>
Presentation at http://us2ts.org/2019/posts/program.html in Reasoning workshop. Examples of reasoning within and across OBO ontologies]]> Mon, 08 Apr 2019 09:39:50 GMT /slideshow/us2ts-reasoning-over-multiple-open-bioontologies-to-make-machines-and-humans-happy/140011741 cmungall@slideshare.net(cmungall) US2TS: Reasoning over multiple open bio-ontologies to make machines and humans happy cmungall Presentation at http://us2ts.org/2019/posts/program.html in Reasoning workshop. Examples of reasoning within and across OBO ontologies <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/us2ts2019-reasoningacrossobo1-190408093950-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> Presentation at http://us2ts.org/2019/posts/program.html in Reasoning workshop. Examples of reasoning within and across OBO ontologies
US2TS: Reasoning over multiple open bio-ontologies to make machines and humans happy from Chris Mungall
]]> 210 2 https://cdn.slidesharecdn.com/ss_thumbnails/us2ts2019-reasoningacrossobo1-190408093950-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Uberon: opening up to community contributions /slideshow/uberon-opening-up-to-community-contributions/140011310 uberon-potato-190408093330
Presentation from the 2nd Phenotypes Traversing All the Organisms (POTATO) Workshop https://www.biocuration2019.org/workshop-potato Brief summary of Uberon and plan for opening up to community contributions]]>
Presentation from the 2nd Phenotypes Traversing All the Organisms (POTATO) Workshop https://www.biocuration2019.org/workshop-potato Brief summary of Uberon and plan for opening up to community contributions]]> Mon, 08 Apr 2019 09:33:30 GMT /slideshow/uberon-opening-up-to-community-contributions/140011310 cmungall@slideshare.net(cmungall) Uberon: opening up to community contributions cmungall Presentation from the 2nd Phenotypes Traversing All the Organisms (POTATO) Workshop https://www.biocuration2019.org/workshop-potato Brief summary of Uberon and plan for opening up to community contributions <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/uberon-potato-190408093330-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> Presentation from the 2nd Phenotypes Traversing All the Organisms (POTATO) Workshop https://www.biocuration2019.org/workshop-potato Brief summary of Uberon and plan for opening up to community contributions
Uberon: opening up to community contributions from Chris Mungall
]]> 146 1 https://cdn.slidesharecdn.com/ss_thumbnails/uberon-potato-190408093330-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Modeling exposure events and adverse outcome pathways using ontologies /slideshow/modeling-exposure-events-and-adverse-outcome-pathways-using-ontologies/119427922 opentox-mungall2018-07-11-181015032201
OpenTox USA 2018 presentation]]>
OpenTox USA 2018 presentation]]> Mon, 15 Oct 2018 03:22:01 GMT /slideshow/modeling-exposure-events-and-adverse-outcome-pathways-using-ontologies/119427922 cmungall@slideshare.net(cmungall) Modeling exposure events and adverse outcome pathways using ontologies cmungall OpenTox USA 2018 presentation <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/opentox-mungall2018-07-11-181015032201-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> OpenTox USA 2018 presentation
Modeling exposure events and adverse outcome pathways using ontologies from Chris Mungall
]]> 228 1 https://cdn.slidesharecdn.com/ss_thumbnails/opentox-mungall2018-07-11-181015032201-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Causal reasoning using the Relation Ontology /slideshow/causal-reasoning-using-the-relation-ontology/119426733 causal-reasoning-using-ro-2018-181015031000
GREEKC Presentation on the OBO Relation Ontology and GO-CAMs http://obofoundry.org/ontology/ro.html]]>
GREEKC Presentation on the OBO Relation Ontology and GO-CAMs http://obofoundry.org/ontology/ro.html]]> Mon, 15 Oct 2018 03:09:59 GMT /slideshow/causal-reasoning-using-the-relation-ontology/119426733 cmungall@slideshare.net(cmungall) Causal reasoning using the Relation Ontology cmungall GREEKC Presentation on the OBO Relation Ontology and GO-CAMs http://obofoundry.org/ontology/ro.html <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/causal-reasoning-using-ro-2018-181015031000-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> GREEKC Presentation on the OBO Relation Ontology and GO-CAMs http://obofoundry.org/ontology/ro.html
Causal reasoning using the Relation Ontology from Chris Mungall
]]> 554 4 https://cdn.slidesharecdn.com/ss_thumbnails/causal-reasoning-using-ro-2018-181015031000-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 US2TS presentation on Gene Ontology /cmungall/us2ts-presentation-on-gene-ontology mungall-us2ts-go-180530231427
US2TS presentation on Gene Ontology http://us2ts.org/]]>
US2TS presentation on Gene Ontology http://us2ts.org/]]> Wed, 30 May 2018 23:14:27 GMT /cmungall/us2ts-presentation-on-gene-ontology cmungall@slideshare.net(cmungall) US2TS presentation on Gene Ontology cmungall US2TS presentation on Gene Ontology http://us2ts.org/ <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/mungall-us2ts-go-180530231427-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> US2TS presentation on Gene Ontology http://us2ts.org/
US2TS presentation on Gene Ontology from Chris Mungall
]]> 406 1 https://cdn.slidesharecdn.com/ss_thumbnails/mungall-us2ts-go-180530231427-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Introduction to the BioLink datamodel /slideshow/introduction-to-the-biolink-datamodel/96198363 biolink-model-180507021303
際際滷s on biolink model delivered to DataCommons KC7 crosscut group. For more information see biolink.github.io/biolink-model/]]>
際際滷s on biolink model delivered to DataCommons KC7 crosscut group. For more information see biolink.github.io/biolink-model/]]> Mon, 07 May 2018 02:13:03 GMT /slideshow/introduction-to-the-biolink-datamodel/96198363 cmungall@slideshare.net(cmungall) Introduction to the BioLink datamodel cmungall 際際滷s on biolink model delivered to DataCommons KC7 crosscut group. For more information see biolink.github.io/biolink-model/ <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/biolink-model-180507021303-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> 際際滷s on biolink model delivered to DataCommons KC7 crosscut group. For more information see biolink.github.io/biolink-model/
Introduction to the BioLink datamodel from Chris Mungall
]]> 1555 3 https://cdn.slidesharecdn.com/ss_thumbnails/biolink-model-180507021303-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Computing on Phenotypes AMP 2015 /slideshow/computing-on-phenotypes-amp-2015/82960768 mungallmonarchamp2015-171129092634
Presentation at AMP 2015]]>
Presentation at AMP 2015]]> Wed, 29 Nov 2017 09:26:33 GMT /slideshow/computing-on-phenotypes-amp-2015/82960768 cmungall@slideshare.net(cmungall) Computing on Phenotypes AMP 2015 cmungall Presentation at AMP 2015 <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/mungallmonarchamp2015-171129092634-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> Presentation at AMP 2015
Computing on Phenotypes AMP 2015 from Chris Mungall
]]> 3827 4 https://cdn.slidesharecdn.com/ss_thumbnails/mungallmonarchamp2015-171129092634-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 ENVO GSC 2015 /cmungall/envo-gsc-2015 envolewis-2015-gsc-171129090248
際際滷s from ENVO flash talk at GSC 2015]]>
際際滷s from ENVO flash talk at GSC 2015]]> Wed, 29 Nov 2017 09:02:48 GMT /cmungall/envo-gsc-2015 cmungall@slideshare.net(cmungall) ENVO GSC 2015 cmungall 際際滷s from ENVO flash talk at GSC 2015 <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/envolewis-2015-gsc-171129090248-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> 際際滷s from ENVO flash talk at GSC 2015
ENVO GSC 2015 from Chris Mungall
]]> 4418 2 https://cdn.slidesharecdn.com/ss_thumbnails/envolewis-2015-gsc-171129090248-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 https://cdn.slidesharecdn.com/profile-photo-cmungall-48x48.jpg?cb=1737235229 I am a scientist at Lawrence Berkeley National Laboratory where I lead a group working on the application of computational techniques to problems life sciences of relevance to the health of humans and the health of the planet. My main interest is the application of artificial intelligence, knowledge-based methods, and bio-curation to advance our understanding of the interconnected role of genes and genetic mechanisms in key biological processes. biosciences.lbl.gov/profiles/chris-mungall/ https://cdn.slidesharecdn.com/ss_thumbnails/madicesmungall2022-230219173046-568649f1-thumbnail.jpg?width=320&height=320&fit=bounds slideshow/madices-mungall-2022pptx/255921916 MADICES Mungall 2022.pptx https://cdn.slidesharecdn.com/ss_thumbnails/mungall-swat4hcls-2023-230219165406-834b3316-thumbnail.jpg?width=320&height=320&fit=bounds slideshow/scaling-up-semantics-lessons-learned-across-the-life-sciences/255921622 Scaling up semantics; ... https://cdn.slidesharecdn.com/ss_thumbnails/linkmlintrojuly2022-220711153806-ce994df9-thumbnail.jpg?width=320&height=320&fit=bounds slideshow/linkml-intro-july-2022pptx/252160895 LinkML Intro July 2022...