ºÝºÝߣshows by User: flxlex / http://www.slideshare.net/images/logo.gif ºÝºÝߣshows by User: flxlex / Wed, 07 May 2014 04:09:34 GMT ºÝºÝߣShare feed for ºÝºÝߣshows by User: flxlex Coding & Best Practice in Programming in the NGS era /slideshow/140507-seq-aheadngscodingbestpractices/34378767 140507-seqahead-ngs-coding-best-practices-140507040934-phpapp01
A talk I gave at the SeqAhead Scientific Meeting 2014 "NGS Data after the Gold Rush", May 7th 2014]]>
A talk I gave at the SeqAhead Scientific Meeting 2014 "NGS Data after the Gold Rush", May 7th 2014]]> Wed, 07 May 2014 04:09:34 GMT /slideshow/140507-seq-aheadngscodingbestpractices/34378767 flxlex@slideshare.net(flxlex) Coding & Best Practice in Programming in the NGS era flxlex A talk I gave at the SeqAhead Scientific Meeting 2014 "NGS Data after the Gold Rush", May 7th 2014 <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/140507-seqahead-ngs-coding-best-practices-140507040934-phpapp01-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> A talk I gave at the SeqAhead Scientific Meeting 2014 &quot;NGS Data after the Gold Rush&quot;, May 7th 2014
Coding & Best Practice in Programming in the NGS era from Lex Nederbragt
]]> 3886 6 https://cdn.slidesharecdn.com/ss_thumbnails/140507-seqahead-ngs-coding-best-practices-140507040934-phpapp01-thumbnail.jpg?width=120&height=120&fit=bounds presentation White http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Why of version control /flxlex/why-of-version-control versioncontrolwhatwhyhow-140401083754-phpapp02
A short introduction to version control]]>
A short introduction to version control]]> Tue, 01 Apr 2014 08:37:54 GMT /flxlex/why-of-version-control flxlex@slideshare.net(flxlex) Why of version control flxlex A short introduction to version control <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/versioncontrolwhatwhyhow-140401083754-phpapp02-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> A short introduction to version control
Why of version control from Lex Nederbragt
]]> 2442 5 https://cdn.slidesharecdn.com/ss_thumbnails/versioncontrolwhatwhyhow-140401083754-phpapp02-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Assembly: before and after /slideshow/assembly-before-and-after/29394153 131218assemblybeforeandafter-131220113549-phpapp02
A talk I gave at the Dec 2013 Assembly Masterclass at UC Davis. Really licensed under CC0. UPDATED May 2014, for the presentation I gave at the combined SeRC Nordic Assembly Workshop in Stockholm, Sweden, May 14th 2014]]>
A talk I gave at the Dec 2013 Assembly Masterclass at UC Davis. Really licensed under CC0. UPDATED May 2014, for the presentation I gave at the combined SeRC Nordic Assembly Workshop in Stockholm, Sweden, May 14th 2014]]> Fri, 20 Dec 2013 11:35:49 GMT /slideshow/assembly-before-and-after/29394153 flxlex@slideshare.net(flxlex) Assembly: before and after flxlex A talk I gave at the Dec 2013 Assembly Masterclass at UC Davis. Really licensed under CC0. UPDATED May 2014, for the presentation I gave at the combined SeRC Nordic Assembly Workshop in Stockholm, Sweden, May 14th 2014 <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/131218assemblybeforeandafter-131220113549-phpapp02-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> A talk I gave at the Dec 2013 Assembly Masterclass at UC Davis. Really licensed under CC0. UPDATED May 2014, for the presentation I gave at the combined SeRC Nordic Assembly Workshop in Stockholm, Sweden, May 14th 2014
Assembly: before and after from Lex Nederbragt
]]> 5568 9 https://cdn.slidesharecdn.com/ss_thumbnails/131218assemblybeforeandafter-131220113549-phpapp02-thumbnail.jpg?width=120&height=120&fit=bounds presentation White http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Improving and validating the Atlantic Cod genome assembly using PacBio /slideshow/131120-pac-biousermeetinglondon/28674460 131120-pacbio-user-meeting-london-131127080629-phpapp02
My talk at the PacBio European Usergroup Meeting, November 20th, 2013]]>
My talk at the PacBio European Usergroup Meeting, November 20th, 2013]]> Wed, 27 Nov 2013 08:06:29 GMT /slideshow/131120-pac-biousermeetinglondon/28674460 flxlex@slideshare.net(flxlex) Improving and validating the Atlantic Cod genome assembly using PacBio flxlex My talk at the PacBio European Usergroup Meeting, November 20th, 2013 <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/131120-pacbio-user-meeting-london-131127080629-phpapp02-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> My talk at the PacBio European Usergroup Meeting, November 20th, 2013
Improving and validating the Atlantic Cod genome assembly using PacBio from Lex Nederbragt
]]> 5066 6 https://cdn.slidesharecdn.com/ss_thumbnails/131120-pacbio-user-meeting-london-131127080629-phpapp02-thumbnail.jpg?width=120&height=120&fit=bounds presentation White http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Repeat after me: Is our research reproducible (enough)? /slideshow/131014-cees-holmenreproducibility/27280925 131014ceesholmenreproducibility-131017012519-phpapp02
A short talk I gave to colleagues at the Centre for Ecological and Evolutionary Synthesis (CEES) Dept. of Biosciences, University of Oslo ]]>
A short talk I gave to colleagues at the Centre for Ecological and Evolutionary Synthesis (CEES) Dept. of Biosciences, University of Oslo ]]> Thu, 17 Oct 2013 01:25:18 GMT /slideshow/131014-cees-holmenreproducibility/27280925 flxlex@slideshare.net(flxlex) Repeat after me: Is our research reproducible (enough)? flxlex A short talk I gave to colleagues at the Centre for Ecological and Evolutionary Synthesis (CEES) Dept. of Biosciences, University of Oslo <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/131014ceesholmenreproducibility-131017012519-phpapp02-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> A short talk I gave to colleagues at the Centre for Ecological and Evolutionary Synthesis (CEES) Dept. of Biosciences, University of Oslo
Repeat after me: Is our research reproducible (enough)? from Lex Nederbragt
]]> 1788 6 https://cdn.slidesharecdn.com/ss_thumbnails/131014ceesholmenreproducibility-131017012519-phpapp02-thumbnail.jpg?width=120&height=120&fit=bounds presentation White http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 A different kettle of fish entirely: bioinformatic challenges and solutions for whole de novo genome assembly of Atlantic cod and Atlantic salmon /slideshow/a-different-kettle-of-fish-entirely-bioinformatic-challenges-and-solutions-for-whole-de-novo-genome-assembly-of-atlantic-cod-and-atlantic-salmon/15569193 121206nscseminar-121210060116-phpapp02
A talk I gave for the 4th yearly seminar of the Norwegian Sequencinc Centre (www.sequencing.uio.no)]]>
A talk I gave for the 4th yearly seminar of the Norwegian Sequencinc Centre (www.sequencing.uio.no)]]> Mon, 10 Dec 2012 06:01:16 GMT /slideshow/a-different-kettle-of-fish-entirely-bioinformatic-challenges-and-solutions-for-whole-de-novo-genome-assembly-of-atlantic-cod-and-atlantic-salmon/15569193 flxlex@slideshare.net(flxlex) A different kettle of fish entirely: bioinformatic challenges and solutions for whole de novo genome assembly of Atlantic cod and Atlantic salmon flxlex A talk I gave for the 4th yearly seminar of the Norwegian Sequencinc Centre (www.sequencing.uio.no) <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/121206nscseminar-121210060116-phpapp02-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> A talk I gave for the 4th yearly seminar of the Norwegian Sequencinc Centre (www.sequencing.uio.no)
A different kettle of fish entirely: bioinformatic challenges and solutions for whole de novo genome assembly of Atlantic cod and Atlantic salmon from Lex Nederbragt
]]> 7373 10 https://cdn.slidesharecdn.com/ss_thumbnails/121206nscseminar-121210060116-phpapp02-thumbnail.jpg?width=120&height=120&fit=bounds presentation White http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Combining PacBio with short read technology for improved de novo genome assembly /slideshow/combining-pacbio-with-short-read-technology-for-improved-de-novo-genome-assembly/14359110 120920pacbiolaunchseminar-120920085516-phpapp02
]]>
]]> Thu, 20 Sep 2012 08:55:14 GMT /slideshow/combining-pacbio-with-short-read-technology-for-improved-de-novo-genome-assembly/14359110 flxlex@slideshare.net(flxlex) Combining PacBio with short read technology for improved de novo genome assembly flxlex <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/120920pacbiolaunchseminar-120920085516-phpapp02-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br>
Combining PacBio with short read technology for improved de novo genome assembly from Lex Nederbragt
]]> 5655 16 https://cdn.slidesharecdn.com/ss_thumbnails/120920pacbiolaunchseminar-120920085516-phpapp02-thumbnail.jpg?width=120&height=120&fit=bounds presentation White http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Updated: New High Throughput Sequencing technologies at the Norwegian Sequencing Centre - and beyond /slideshow/updated-new-high-throughput-sequencing-technologies-at-the-norwegian-sequencing-centre-and-beyond/14109853 120829clsiseminar-120829135159-phpapp02
Un update of the previous talk with the same title. A talk I gave at the Computational Life Science initiative (University of Oslo) about new High Throughput Sequencing instruments at the Norwegian Sequencing Centre. I also mentioned future upgrades, and the upcoming nanopore sequencing platform of Oxford nanopore.]]>
Un update of the previous talk with the same title. A talk I gave at the Computational Life Science initiative (University of Oslo) about new High Throughput Sequencing instruments at the Norwegian Sequencing Centre. I also mentioned future upgrades, and the upcoming nanopore sequencing platform of Oxford nanopore.]]> Wed, 29 Aug 2012 13:51:55 GMT /slideshow/updated-new-high-throughput-sequencing-technologies-at-the-norwegian-sequencing-centre-and-beyond/14109853 flxlex@slideshare.net(flxlex) Updated: New High Throughput Sequencing technologies at the Norwegian Sequencing Centre - and beyond flxlex Un update of the previous talk with the same title. A talk I gave at the Computational Life Science initiative (University of Oslo) about new High Throughput Sequencing instruments at the Norwegian Sequencing Centre. I also mentioned future upgrades, and the upcoming nanopore sequencing platform of Oxford nanopore. <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/120829clsiseminar-120829135159-phpapp02-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> Un update of the previous talk with the same title. A talk I gave at the Computational Life Science initiative (University of Oslo) about new High Throughput Sequencing instruments at the Norwegian Sequencing Centre. I also mentioned future upgrades, and the upcoming nanopore sequencing platform of Oxford nanopore.
Updated: New High Throughput Sequencing technologies at the Norwegian Sequencing Centre - and beyond from Lex Nederbragt
]]> 3364 8 https://cdn.slidesharecdn.com/ss_thumbnails/120829clsiseminar-120829135159-phpapp02-thumbnail.jpg?width=120&height=120&fit=bounds presentation White http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 New High Throughput Sequencing technologies at the Norwegian Sequencing Centre - and beyond /flxlex/new-high-throughput-sequencing-technologies-at-the-norwegian-sequencing-centre-and-beyond 120605mergseminar-120605091228-phpapp01
A talk I gave at the Microbiology Research Group (University of Oslo) about new High Throughput Sequencing instruments at the Norwegian Sequencing Centre. I also mentioned future upgrades, and the upcoming nanopore sequencing platform of Oxford nanopore]]>
A talk I gave at the Microbiology Research Group (University of Oslo) about new High Throughput Sequencing instruments at the Norwegian Sequencing Centre. I also mentioned future upgrades, and the upcoming nanopore sequencing platform of Oxford nanopore]]> Tue, 05 Jun 2012 09:12:26 GMT /flxlex/new-high-throughput-sequencing-technologies-at-the-norwegian-sequencing-centre-and-beyond flxlex@slideshare.net(flxlex) New High Throughput Sequencing technologies at the Norwegian Sequencing Centre - and beyond flxlex A talk I gave at the Microbiology Research Group (University of Oslo) about new High Throughput Sequencing instruments at the Norwegian Sequencing Centre. I also mentioned future upgrades, and the upcoming nanopore sequencing platform of Oxford nanopore <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/120605mergseminar-120605091228-phpapp01-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> A talk I gave at the Microbiology Research Group (University of Oslo) about new High Throughput Sequencing instruments at the Norwegian Sequencing Centre. I also mentioned future upgrades, and the upcoming nanopore sequencing platform of Oxford nanopore
New High Throughput Sequencing technologies at the Norwegian Sequencing Centre - and beyond from Lex Nederbragt
]]> 5091 6 https://cdn.slidesharecdn.com/ss_thumbnails/120605mergseminar-120605091228-phpapp01-thumbnail.jpg?width=120&height=120&fit=bounds presentation White http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 How and why I use blogging /slideshow/how-and-why-i-use-blogging/12913631 120507lltforslideshare-120513091907-phpapp02
A talk I gave for my colleagues on how and why I use blogging and twitter for science, trying to convince them to start doing the same. DO check out the presenter notes! (see tab 'notes')]]>
A talk I gave for my colleagues on how and why I use blogging and twitter for science, trying to convince them to start doing the same. DO check out the presenter notes! (see tab 'notes')]]> Sun, 13 May 2012 09:19:05 GMT /slideshow/how-and-why-i-use-blogging/12913631 flxlex@slideshare.net(flxlex) How and why I use blogging flxlex A talk I gave for my colleagues on how and why I use blogging �and twitter �for science, trying to convince them to start doing the same. DO check out the presenter notes! (see tab 'notes') <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/120507lltforslideshare-120513091907-phpapp02-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> A talk I gave for my colleagues on how and why I use blogging �and twitter �for science, trying to convince them to start doing the same. DO check out the presenter notes! (see tab &#39;notes&#39;)
How and why I use blogging from Lex Nederbragt
]]> 1066 3 https://cdn.slidesharecdn.com/ss_thumbnails/120507lltforslideshare-120513091907-phpapp02-thumbnail.jpg?width=120&height=120&fit=bounds presentation White http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 How to sequence a large eukaryotic genome /slideshow/how-to-sequence-a-large-eukaryotic-genome-and-how-we-sequenced-the-cod-genome/9471002 110928clsioncodgenome-110929063927-phpapp01
How to sequence a large eukaryotic genome - and how we sequenced the cod genome. A seminar I gave for the Computational Life Science (Univ. of Oslo) seminar series, September 28, 2011]]>
How to sequence a large eukaryotic genome - and how we sequenced the cod genome. A seminar I gave for the Computational Life Science (Univ. of Oslo) seminar series, September 28, 2011]]> Thu, 29 Sep 2011 06:39:25 GMT /slideshow/how-to-sequence-a-large-eukaryotic-genome-and-how-we-sequenced-the-cod-genome/9471002 flxlex@slideshare.net(flxlex) How to sequence a large eukaryotic genome flxlex How to sequence a large eukaryotic genome� - and how we sequenced the cod genome. A seminar I gave for the Computational Life Science (Univ. of Oslo) seminar series, September 28, 2011 <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/110928clsioncodgenome-110929063927-phpapp01-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> How to sequence a large eukaryotic genome� - and how we sequenced the cod genome. A seminar I gave for the Computational Life Science (Univ. of Oslo) seminar series, September 28, 2011
How to sequence a large eukaryotic genome from Lex Nederbragt
]]> 14768 7 https://cdn.slidesharecdn.com/ss_thumbnails/110928clsioncodgenome-110929063927-phpapp01-thumbnail.jpg?width=120&height=120&fit=bounds presentation White http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Assembly of metagenomes /slideshow/assembly-of-metagenomes/7518788 110404assemblymetagenomesln-110405032540-phpapp01
A talk for I gave for the 2011 metagenomics course at the Biological Dept. Univ. of Oslo April 2011]]>
A talk for I gave for the 2011 metagenomics course at the Biological Dept. Univ. of Oslo April 2011]]> Tue, 05 Apr 2011 03:25:35 GMT /slideshow/assembly-of-metagenomes/7518788 flxlex@slideshare.net(flxlex) Assembly of metagenomes flxlex A talk for I gave for the 2011 metagenomics course at the Biological Dept. Univ. of Oslo April 2011 <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/110404assemblymetagenomesln-110405032540-phpapp01-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> A talk for I gave for the 2011 metagenomics course at the Biological Dept. Univ. of Oslo April 2011
Assembly of metagenomes from Lex Nederbragt
]]> 3403 4 https://cdn.slidesharecdn.com/ss_thumbnails/110404assemblymetagenomesln-110405032540-phpapp01-thumbnail.jpg?width=120&height=120&fit=bounds presentation White http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 NGS techniques and data /slideshow/ngs-techniques-and-data-relevant-for-metagenomics-analyses/7518740 110404ngsintroformetagenomicsln-110405031802-phpapp02
A talk for I gave for the 2011 metagenomics course at the Biological Dept. Univ. of Oslo April 2011]]>
A talk for I gave for the 2011 metagenomics course at the Biological Dept. Univ. of Oslo April 2011]]> Tue, 05 Apr 2011 03:18:00 GMT /slideshow/ngs-techniques-and-data-relevant-for-metagenomics-analyses/7518740 flxlex@slideshare.net(flxlex) NGS techniques and data flxlex A talk for I gave for the 2011 metagenomics course at the Biological Dept. Univ. of Oslo April 2011 <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/110404ngsintroformetagenomicsln-110405031802-phpapp02-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> A talk for I gave for the 2011 metagenomics course at the Biological Dept. Univ. of Oslo April 2011
NGS techniques and data from Lex Nederbragt
]]> 902 3 https://cdn.slidesharecdn.com/ss_thumbnails/110404ngsintroformetagenomicsln-110405031802-phpapp02-thumbnail.jpg?width=120&height=120&fit=bounds presentation White http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 NGS: bioinformatic challenges /slideshow/ngs-bioinformatic-challenges/7130193 110302clsseminar-110303024729-phpapp02
Next generation sequencing: research opportunities and bioinformatic challenges. A seminar I gave for the Computational Life Science (Univ. of Oslo) seminar series, March 2, 2011]]>
Next generation sequencing: research opportunities and bioinformatic challenges. A seminar I gave for the Computational Life Science (Univ. of Oslo) seminar series, March 2, 2011]]> Thu, 03 Mar 2011 02:47:25 GMT /slideshow/ngs-bioinformatic-challenges/7130193 flxlex@slideshare.net(flxlex) NGS: bioinformatic challenges flxlex Next generation sequencing: research opportunities and bioinformatic challenges. A seminar I gave for the Computational Life Science (Univ. of Oslo) seminar series, March 2, 2011 <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/110302clsseminar-110303024729-phpapp02-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> Next generation sequencing: research opportunities and bioinformatic challenges. A seminar I gave for the Computational Life Science (Univ. of Oslo) seminar series, March 2, 2011
NGS: bioinformatic challenges from Lex Nederbragt
]]> 4771 8 https://cdn.slidesharecdn.com/ss_thumbnails/110302clsseminar-110303024729-phpapp02-thumbnail.jpg?width=120&height=120&fit=bounds presentation White http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 https://public.slidesharecdn.com/v2/images/profile-picture.png I am a Senior Lecturer ('Førstelektor') at the Department of Biosciences, University of Oslo. I am also head of education and training for the Centre for Bioinformatics, Dept. of Informatics, Univ. of Oslo. At the Dept. of Biosciences, I lead the implementation of Computing in Science Education in the bachelor degree. As part of that I organise the first-semester course "Introduction to Computational Modelling for the Biosciences" (BIOS1100), teaching new Bioscience students mathematical modeling of biological problems using Python. For the Centre for Bioinformatics, I develop and coordinate a portfolio of credited courses as well as workshops for master and PhD students and other staff. lexnederbragt.com https://cdn.slidesharecdn.com/ss_thumbnails/140507-seqahead-ngs-coding-best-practices-140507040934-phpapp01-thumbnail.jpg?width=320&height=320&fit=bounds slideshow/140507-seq-aheadngscodingbestpractices/34378767 Coding &amp; Best Practice... https://cdn.slidesharecdn.com/ss_thumbnails/versioncontrolwhatwhyhow-140401083754-phpapp02-thumbnail.jpg?width=320&height=320&fit=bounds flxlex/why-of-version-control Why of version control https://cdn.slidesharecdn.com/ss_thumbnails/131218assemblybeforeandafter-131220113549-phpapp02-thumbnail.jpg?width=320&height=320&fit=bounds slideshow/assembly-before-and-after/29394153 Assembly: before and a...