ºÝºÝߣshows by User: joaoandrecarrico / http://www.slideshare.net/images/logo.gif ºÝºÝߣshows by User: joaoandrecarrico / Tue, 05 Sep 2017 10:09:26 GMT ºÝºÝߣShare feed for ºÝºÝߣshows by User: joaoandrecarrico Software Pipelines: The Good, The Bad and The Ugly /slideshow/software-pipelines-the-good-the-bad-and-the-ugly/79443448 ngsbasel2sep2017vf-170905100926
Presentation in the "Whole genome sequencing for clinical microbiology:Translation into routine applications" Symposium , Basel , Switzerland, 2 Sep 2017 ]]>
Presentation in the "Whole genome sequencing for clinical microbiology:Translation into routine applications" Symposium , Basel , Switzerland, 2 Sep 2017 ]]> Tue, 05 Sep 2017 10:09:26 GMT /slideshow/software-pipelines-the-good-the-bad-and-the-ugly/79443448 joaoandrecarrico@slideshare.net(joaoandrecarrico) Software Pipelines: The Good, The Bad and The Ugly joaoandrecarrico Presentation in the "Whole genome sequencing for clinical microbiology:Translation into routine applications" Symposium , Basel , Switzerland, 2 Sep 2017 <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/ngsbasel2sep2017vf-170905100926-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> Presentation in the &quot;Whole genome sequencing for clinical microbiology:Translation into routine applications&quot; Symposium , Basel , Switzerland, 2 Sep 2017
Software Pipelines: The Good, The Bad and The Ugly from Joß_o AndrÞ{ CarriÙão
]]> 752 4 https://cdn.slidesharecdn.com/ss_thumbnails/ngsbasel2sep2017vf-170905100926-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Genomic Epidemiology: How High Throughput Sequencing changed our view on bacterial strain similarity /slideshow/genomic-epidemiology-how-high-throughput-sequencing-changed-our-view-on-bacterial-strain-similarity/72777755 jacbod2017braga2017small-170303145833
Talk given for the Bioinformatic Open Days 2017, a local bioinformatics conference destined for Bioinformatics MsC students. ]]>
Talk given for the Bioinformatic Open Days 2017, a local bioinformatics conference destined for Bioinformatics MsC students. ]]> Fri, 03 Mar 2017 14:58:32 GMT /slideshow/genomic-epidemiology-how-high-throughput-sequencing-changed-our-view-on-bacterial-strain-similarity/72777755 joaoandrecarrico@slideshare.net(joaoandrecarrico) Genomic Epidemiology: How High Throughput Sequencing changed our view on bacterial strain similarity joaoandrecarrico Talk given for the Bioinformatic Open Days 2017, a local bioinformatics conference destined for Bioinformatics MsC students. <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/jacbod2017braga2017small-170303145833-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> Talk given for the Bioinformatic Open Days 2017, a local bioinformatics conference destined for Bioinformatics MsC students.
Genomic Epidemiology: How High Throughput Sequencing changed our view on bacterial strain similarity from Joß_o AndrÞ{ CarriÙão
]]> 1213 4 https://cdn.slidesharecdn.com/ss_thumbnails/jacbod2017braga2017small-170303145833-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Comparing Typing Methods : Do's and Don't's /slideshow/comparing-typing-methods-dos-and-donts/63134406 comptypingasm2016-160616114632
Talk at ASM Microbe Boston 2016 - WS 24 Workshop - NGS for Microbial Genomics Surveillance and more - One Technology Fits All - 8.15- 4:15 PM]]>
Talk at ASM Microbe Boston 2016 - WS 24 Workshop - NGS for Microbial Genomics Surveillance and more - One Technology Fits All - 8.15- 4:15 PM]]> Thu, 16 Jun 2016 11:46:32 GMT /slideshow/comparing-typing-methods-dos-and-donts/63134406 joaoandrecarrico@slideshare.net(joaoandrecarrico) Comparing Typing Methods : Do's and Don't's joaoandrecarrico Talk at ASM Microbe Boston 2016 - WS 24 Workshop - NGS for Microbial Genomics Surveillance and more - One Technology Fits All - 8.15- 4:15 PM <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/comptypingasm2016-160616114632-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> Talk at ASM Microbe Boston 2016 - WS 24 Workshop - NGS for Microbial Genomics Surveillance and more - One Technology Fits All - 8.15- 4:15 PM
Comparing Typing Methods : Do's and Don't's from Joß_o AndrÞ{ CarriÙão
]]> 537 6 https://cdn.slidesharecdn.com/ss_thumbnails/comptypingasm2016-160616114632-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Making Use of NGS Data: From Reads to Trees and Annotations /slideshow/making-use-of-ngs-data-from-reads-to-trees-and-annotations/63134256 asmmicrobeboston2016-160616114133
Talk at ASM Microbe Boston 2016 - WS 24 Workshop - NGS for Microbial Genomics Surveillance and more - One Technology Fits All - 8.15- 4:15 PM ]]>
Talk at ASM Microbe Boston 2016 - WS 24 Workshop - NGS for Microbial Genomics Surveillance and more - One Technology Fits All - 8.15- 4:15 PM ]]> Thu, 16 Jun 2016 11:41:33 GMT /slideshow/making-use-of-ngs-data-from-reads-to-trees-and-annotations/63134256 joaoandrecarrico@slideshare.net(joaoandrecarrico) Making Use of NGS Data: From Reads to Trees and Annotations joaoandrecarrico Talk at ASM Microbe Boston 2016 - WS 24 Workshop - NGS for Microbial Genomics Surveillance and more - One Technology Fits All - 8.15- 4:15 PM <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/asmmicrobeboston2016-160616114133-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> Talk at ASM Microbe Boston 2016 - WS 24 Workshop - NGS for Microbial Genomics Surveillance and more - One Technology Fits All - 8.15- 4:15 PM
Making Use of NGS Data: From Reads to Trees and Annotations from Joß_o AndrÞ{ CarriÙão
]]> 1298 6 https://cdn.slidesharecdn.com/ss_thumbnails/asmmicrobeboston2016-160616114133-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Common languages in genomic epidemiology: from ontologies to algorithms /slideshow/common-languages-in-genomic-epidemiology-from-ontologies-to-algorithms/62912433 jacrami-ngshamburg9jun2016-160609221221
Presentation for 2nd Conference Rapid Microbial NGS and Bioinformatics: Translation Into Practice Hamburg/Germany, June 9-11, 2016 http://rami-ngs.org/]]>
Presentation for 2nd Conference Rapid Microbial NGS and Bioinformatics: Translation Into Practice Hamburg/Germany, June 9-11, 2016 http://rami-ngs.org/]]> Thu, 09 Jun 2016 22:12:21 GMT /slideshow/common-languages-in-genomic-epidemiology-from-ontologies-to-algorithms/62912433 joaoandrecarrico@slideshare.net(joaoandrecarrico) Common languages in genomic epidemiology: from ontologies to algorithms joaoandrecarrico Presentation for 2nd Conference Rapid Microbial NGS and Bioinformatics: Translation Into Practice Hamburg/Germany, June 9-11, 2016 http://rami-ngs.org/ <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/jacrami-ngshamburg9jun2016-160609221221-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> Presentation for 2nd Conference Rapid Microbial NGS and Bioinformatics: Translation Into Practice Hamburg/Germany, June 9-11, 2016 http://rami-ngs.org/
Common languages in genomic epidemiology: from ontologies to algorithms from Joß_o AndrÞ{ CarriÙão
]]> 453 6 https://cdn.slidesharecdn.com/ss_thumbnails/jacrami-ngshamburg9jun2016-160609221221-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Computational Resources In Infectious Disease /slideshow/computational-resources-in-infectious-disease/60855504 escmidamsterdam2016meettheexperts-160413093351
Meet-the-expert session in ECCMID 2016 ]]>
Meet-the-expert session in ECCMID 2016 ]]> Wed, 13 Apr 2016 09:33:51 GMT /slideshow/computational-resources-in-infectious-disease/60855504 joaoandrecarrico@slideshare.net(joaoandrecarrico) Computational Resources In Infectious Disease joaoandrecarrico Meet-the-expert session in ECCMID 2016 <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/escmidamsterdam2016meettheexperts-160413093351-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> Meet-the-expert session in ECCMID 2016
Computational Resources In Infectious Disease from Joß_o AndrÞ{ CarriÙão
]]> 1211 6 https://cdn.slidesharecdn.com/ss_thumbnails/escmidamsterdam2016meettheexperts-160413093351-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 ECCMID 2016 - How to build actionable virulome databases /slideshow/eccmid-2016-how-to-build-actionable-virulome-databases/60715622 escmidamesterdam2016virdb-160410133642
Talks given at the Session SY024 - Controversies in interpreting whole genome sequence data 9-April-2016 : http://eccmidlive.org/#resources/how-can-we-design-actionable-virulome-databases]]>
Talks given at the Session SY024 - Controversies in interpreting whole genome sequence data 9-April-2016 : http://eccmidlive.org/#resources/how-can-we-design-actionable-virulome-databases]]> Sun, 10 Apr 2016 13:36:42 GMT /slideshow/eccmid-2016-how-to-build-actionable-virulome-databases/60715622 joaoandrecarrico@slideshare.net(joaoandrecarrico) ECCMID 2016 - How to build actionable virulome databases joaoandrecarrico Talks given at the Session SY024 - Controversies in interpreting whole genome sequence data 9-April-2016 : http://eccmidlive.org/#resources/how-can-we-design-actionable-virulome-databases <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/escmidamesterdam2016virdb-160410133642-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> Talks given at the Session SY024 - Controversies in interpreting whole genome sequence data 9-April-2016 : http://eccmidlive.org/#resources/how-can-we-design-actionable-virulome-databases
ECCMID 2016 - How to build actionable virulome databases from Joß_o AndrÞ{ CarriÙão
]]> 581 7 https://cdn.slidesharecdn.com/ss_thumbnails/escmidamesterdam2016virdb-160410133642-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Choosing the Right Microbial Typing Method: A Quantitative Approach /slideshow/choosing-the-right-microbial-typing-method-a-quantitative-approach/54626984 choosingtypingmethodsmayo2015-151102023436-lva1-app6891
Mayo Clinic, Rochester 2 November 2015]]>
Mayo Clinic, Rochester 2 November 2015]]> Mon, 02 Nov 2015 02:34:36 GMT /slideshow/choosing-the-right-microbial-typing-method-a-quantitative-approach/54626984 joaoandrecarrico@slideshare.net(joaoandrecarrico) Choosing the Right Microbial Typing Method: A Quantitative Approach joaoandrecarrico Mayo Clinic, Rochester 2 November 2015 <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/choosingtypingmethodsmayo2015-151102023436-lva1-app6891-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> Mayo Clinic, Rochester 2 November 2015
Choosing the Right Microbial Typing Method: A Quantitative Approach from Joß_o AndrÞ{ CarriÙão
]]> 1059 5 https://cdn.slidesharecdn.com/ss_thumbnails/choosingtypingmethodsmayo2015-151102023436-lva1-app6891-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 NGSonto and TyPon /joaoandrecarrico/ngsonto-and-typon ngsontotyponicbo2015-150729093221-lva1-app6892
Presentation for the Genomics Workshop on the International Conference on Biomedical Ontology 2015, Lisbon, 27-30 July (http://icbo2015.fc.ul.pt/) ]]>
Presentation for the Genomics Workshop on the International Conference on Biomedical Ontology 2015, Lisbon, 27-30 July (http://icbo2015.fc.ul.pt/) ]]> Wed, 29 Jul 2015 09:32:21 GMT /joaoandrecarrico/ngsonto-and-typon joaoandrecarrico@slideshare.net(joaoandrecarrico) NGSonto and TyPon joaoandrecarrico Presentation for the Genomics Workshop on the International Conference on Biomedical Ontology 2015, Lisbon, 27-30 July (http://icbo2015.fc.ul.pt/) <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/ngsontotyponicbo2015-150729093221-lva1-app6892-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> Presentation for the Genomics Workshop on the International Conference on Biomedical Ontology 2015, Lisbon, 27-30 July (http://icbo2015.fc.ul.pt/)
NGSonto and TyPon from Joß_o AndrÞ{ CarriÙão
]]> 363 5 https://cdn.slidesharecdn.com/ss_thumbnails/ngsontotyponicbo2015-150729093221-lva1-app6892-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Integrating phylogenetic inference and metadata visualization for NGS data /slideshow/phylogenetic-inference-and-metadata-integration-for/48784472 phylovizasm2015-150530120251-lva1-app6891
Integrating phylogenetic inference and metadata visualization for NGS data]]>
Integrating phylogenetic inference and metadata visualization for NGS data]]> Sat, 30 May 2015 12:02:51 GMT /slideshow/phylogenetic-inference-and-metadata-integration-for/48784472 joaoandrecarrico@slideshare.net(joaoandrecarrico) Integrating phylogenetic inference and metadata visualization for NGS data joaoandrecarrico Integrating phylogenetic inference and metadata visualization for NGS data <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/phylovizasm2015-150530120251-lva1-app6891-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> Integrating phylogenetic inference and metadata visualization for NGS data
Integrating phylogenetic inference and metadata visualization for NGS data from Joß_o AndrÞ{ CarriÙão
]]> 1222 3 https://cdn.slidesharecdn.com/ss_thumbnails/phylovizasm2015-150530120251-lva1-app6891-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 How to compare typing techniques:?do¡¯s and Don¡¯t¡¯s /joaoandrecarrico/how-to-compare-typing-techniquesdos-and-donts comptypingasm2015-150530112039-lva1-app6891
ASM 2105 Talk on the quantitative methodologies for the comparison of bacterial typing techniques]]>
ASM 2105 Talk on the quantitative methodologies for the comparison of bacterial typing techniques]]> Sat, 30 May 2015 11:20:39 GMT /joaoandrecarrico/how-to-compare-typing-techniquesdos-and-donts joaoandrecarrico@slideshare.net(joaoandrecarrico) How to compare typing techniques:?do¡¯s and Don¡¯t¡¯s joaoandrecarrico ASM 2105 Talk on the quantitative methodologies for the comparison of bacterial typing techniques <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/comptypingasm2015-150530112039-lva1-app6891-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> ASM 2105 Talk on the quantitative methodologies for the comparison of bacterial typing techniques
How to compare typing techniques: do¸MÙü and Don¸M³å¸MÙü from Jo¥Æ¡¹o Andr¥Æ¥¥ Carri¥Æ¥¡o
]]> 1158 1 https://cdn.slidesharecdn.com/ss_thumbnails/comptypingasm2015-150530112039-lva1-app6891-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Eccmid meet the expert 2015 /joaoandrecarrico/eccmid-meet-theexpert2015 eccmidmeettheexpert2015-150426101453-conversion-gate02
ECCMID meet-the-expert session What bioinformatic tools should I use for analysis of high-throughput sequencing data for molecular diagnostics?]]>
ECCMID meet-the-expert session What bioinformatic tools should I use for analysis of high-throughput sequencing data for molecular diagnostics?]]> Sun, 26 Apr 2015 10:14:53 GMT /joaoandrecarrico/eccmid-meet-theexpert2015 joaoandrecarrico@slideshare.net(joaoandrecarrico) Eccmid meet the expert 2015 joaoandrecarrico ECCMID meet-the-expert session What bioinformatic tools should I use for analysis of high-throughput sequencing data for molecular diagnostics? <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/eccmidmeettheexpert2015-150426101453-conversion-gate02-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> ECCMID meet-the-expert session What bioinformatic tools should I use for analysis of high-throughput sequencing data for molecular diagnostics?
Eccmid meet the expert 2015 from Joß_o AndrÞ{ CarriÙão
]]> 1213 4 https://cdn.slidesharecdn.com/ss_thumbnails/eccmidmeettheexpert2015-150426101453-conversion-gate02-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 https://cdn.slidesharecdn.com/profile-photo-joaoandrecarrico-48x48.jpg?cb=1540049128 The focus of my research are the data management and data analysis aspects related to microbial typing and microbiological questions in general. I've been involved in setting up online databases for EU Framework projects - http://euris.itqb.unl.pt and http://previs.itqb.unl.pt- and a online website for identification of the SCCmec type in Staphylococcus spp. - www.ccrbtyping.net. I've also implemented a website where users can compare partitions with known and well studied metrics - http://www.comparingpartitions.info. Currently I'm interested in 'in silico' population simulations a as a way to interpret data from sequence based typing methods and the development of new algorithms w... www.joaocarrico.info https://cdn.slidesharecdn.com/ss_thumbnails/ngsbasel2sep2017vf-170905100926-thumbnail.jpg?width=320&height=320&fit=bounds slideshow/software-pipelines-the-good-the-bad-and-the-ugly/79443448 Software Pipelines: Th... https://cdn.slidesharecdn.com/ss_thumbnails/jacbod2017braga2017small-170303145833-thumbnail.jpg?width=320&height=320&fit=bounds slideshow/genomic-epidemiology-how-high-throughput-sequencing-changed-our-view-on-bacterial-strain-similarity/72777755 Genomic Epidemiology: ... https://cdn.slidesharecdn.com/ss_thumbnails/comptypingasm2016-160616114632-thumbnail.jpg?width=320&height=320&fit=bounds slideshow/comparing-typing-methods-dos-and-donts/63134406 Comparing Typing Metho...