際際滷shows by User: reecehart / http://www.slideshare.net/images/logo.gif 際際滷shows by User: reecehart / Sat, 09 Apr 2016 07:14:42 GMT 際際滷Share feed for 際際滷shows by User: reecehart HGVS 2015 poster: hgvs, uta, variantanalyzer /reecehart/hgvs-2015-poster-hgvs-uta-variantanalyzer 9fe8eedb-d34d-45cf-9e53-fe9309c5adf0-160409071442
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]]> Sat, 09 Apr 2016 07:14:42 GMT /reecehart/hgvs-2015-poster-hgvs-uta-variantanalyzer reecehart@slideshare.net(reecehart) HGVS 2015 poster: hgvs, uta, variantanalyzer reecehart <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/9fe8eedb-d34d-45cf-9e53-fe9309c5adf0-160409071442-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br>
HGVS 2015 poster: hgvs, uta, variantanalyzer from Reece Hart
]]> 435 6 https://cdn.slidesharecdn.com/ss_thumbnails/9fe8eedb-d34d-45cf-9e53-fe9309c5adf0-160409071442-thumbnail.jpg?width=120&height=120&fit=bounds document 000000 http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Clinical significance of transcript alignment discrepancies gne - 20141016 /slideshow/clinical-significance-of-transcript-alignment-discrepancies-gne-20141016/40381883 clinicalsignificanceoftranscriptalignmentdiscrepancies-gne-20141016-141017000245-conversion-gate02
Update of the HVP Clinical Significance, given at Genentech on 2014-10-16.]]>
Update of the HVP Clinical Significance, given at Genentech on 2014-10-16.]]> Fri, 17 Oct 2014 00:02:45 GMT /slideshow/clinical-significance-of-transcript-alignment-discrepancies-gne-20141016/40381883 reecehart@slideshare.net(reecehart) Clinical significance of transcript alignment discrepancies gne - 20141016 reecehart Update of the HVP Clinical Significance, given at Genentech on 2014-10-16. <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/clinicalsignificanceoftranscriptalignmentdiscrepancies-gne-20141016-141017000245-conversion-gate02-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> Update of the HVP Clinical Significance, given at Genentech on 2014-10-16.
Clinical significance of transcript alignment discrepancies gne - 20141016 from Reece Hart
]]> 901 6 https://cdn.slidesharecdn.com/ss_thumbnails/clinicalsignificanceoftranscriptalignmentdiscrepancies-gne-20141016-141017000245-conversion-gate02-thumbnail.jpg?width=120&height=120&fit=bounds presentation 000000 http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 The Clinical Significance of Transcript Alignment Discrepancies /slideshow/hvp-2014-clinical-significance-of-transcript-alignment-discrepancies/35283905 uskvcmajt9sanwbcgfse-140529184219-phpapp02
Gene transcripts are the lens through which we understand variants that are identified by genome sequencing, reported in scientific literature, and communicated on clinical reports. An accurate, shared representation of transcripts is essential to communicating variants reliably. This talk presents observations of significant discrepancies between sources of transcripts that will lead to discrepancies in the clinical interpretation of variants, and tools that we have released to contend with these complexities. ]]>
Gene transcripts are the lens through which we understand variants that are identified by genome sequencing, reported in scientific literature, and communicated on clinical reports. An accurate, shared representation of transcripts is essential to communicating variants reliably. This talk presents observations of significant discrepancies between sources of transcripts that will lead to discrepancies in the clinical interpretation of variants, and tools that we have released to contend with these complexities. ]]> Thu, 29 May 2014 18:42:19 GMT /slideshow/hvp-2014-clinical-significance-of-transcript-alignment-discrepancies/35283905 reecehart@slideshare.net(reecehart) The Clinical Significance of Transcript Alignment Discrepancies reecehart Gene transcripts are the lens through which we understand variants that are identified by genome sequencing, reported in scientific literature, and communicated on clinical reports. An accurate, shared representation of transcripts is essential to communicating variants reliably. This talk presents observations of significant discrepancies between sources of transcripts that will lead to discrepancies in the clinical interpretation of variants, and tools that we have released to contend with these complexities. <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/uskvcmajt9sanwbcgfse-140529184219-phpapp02-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> Gene transcripts are the lens through which we understand variants that are identified by genome sequencing, reported in scientific literature, and communicated on clinical reports. An accurate, shared representation of transcripts is essential to communicating variants reliably. This talk presents observations of significant discrepancies between sources of transcripts that will lead to discrepancies in the clinical interpretation of variants, and tools that we have released to contend with these complexities.
The Clinical Significance of Transcript Alignment Discrepancies from Reece Hart
]]> 2625 7 https://cdn.slidesharecdn.com/ss_thumbnails/uskvcmajt9sanwbcgfse-140529184219-phpapp02-thumbnail.jpg?width=120&height=120&fit=bounds presentation White http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Invitae PSB 2014 poster /slideshow/invitae-psb-2014-poster/29675370 invitaepsb2014poster-140103185316-phpapp01
Invitae's poster at the 2014 Pacific Symposium on Biocomputing.]]>
Invitae's poster at the 2014 Pacific Symposium on Biocomputing.]]> Fri, 03 Jan 2014 18:53:16 GMT /slideshow/invitae-psb-2014-poster/29675370 reecehart@slideshare.net(reecehart) Invitae PSB 2014 poster reecehart Invitae's poster at the 2014 Pacific Symposium on Biocomputing. <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/invitaepsb2014poster-140103185316-phpapp01-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> Invitae&#39;s poster at the 2014 Pacific Symposium on Biocomputing.
Invitae PSB 2014 poster from Reece Hart
]]> 1211 3 https://cdn.slidesharecdn.com/ss_thumbnails/invitaepsb2014poster-140103185316-phpapp01-thumbnail.jpg?width=120&height=120&fit=bounds document Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 AWS Life Sciences /reecehart/aws-lifesciences awslifesciences-130422173609-phpapp02
Talk at AWS Life Sciences event in San Francisco, April 4, 2013.]]>
Talk at AWS Life Sciences event in San Francisco, April 4, 2013.]]> Mon, 22 Apr 2013 17:36:09 GMT /reecehart/aws-lifesciences reecehart@slideshare.net(reecehart) AWS Life Sciences reecehart Talk at AWS Life Sciences event in San Francisco, April 4, 2013. <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/awslifesciences-130422173609-phpapp02-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> Talk at AWS Life Sciences event in San Francisco, April 4, 2013.
AWS Life Sciences from Reece Hart
]]> 1013 5 https://cdn.slidesharecdn.com/ss_thumbnails/awslifesciences-130422173609-phpapp02-thumbnail.jpg?width=120&height=120&fit=bounds presentation White http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 ASHG 2012 Poster /slideshow/ashg-2012-poster/15060454 ashg-bioinfo-121107003153-phpapp01
Overview of bioinformatics support for clinical diagnostics at InVitae. This pipeline is the result of a large team effort.]]>
Overview of bioinformatics support for clinical diagnostics at InVitae. This pipeline is the result of a large team effort.]]> Wed, 07 Nov 2012 00:31:51 GMT /slideshow/ashg-2012-poster/15060454 reecehart@slideshare.net(reecehart) ASHG 2012 Poster reecehart Overview of bioinformatics support for clinical diagnostics at InVitae. This pipeline is the result of a large team effort. <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/ashg-bioinfo-121107003153-phpapp01-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> Overview of bioinformatics support for clinical diagnostics at InVitae. This pipeline is the result of a large team effort.
ASHG 2012 Poster from Reece Hart
]]> 801 3 https://cdn.slidesharecdn.com/ss_thumbnails/ashg-bioinfo-121107003153-phpapp01-thumbnail.jpg?width=120&height=120&fit=bounds document Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Building a clinical genome interpretation services company /slideshow/building-a-clinical-genome-interpretation-services-company/14678633 20120127ucbseqsupergroup-13499316041667-phpapp02-121011000152-phpapp02
Talk given to the Berkeley sequencing supergroup in January 2012.]]>
Talk given to the Berkeley sequencing supergroup in January 2012.]]> Thu, 11 Oct 2012 00:01:30 GMT /slideshow/building-a-clinical-genome-interpretation-services-company/14678633 reecehart@slideshare.net(reecehart) Building a clinical genome interpretation services company reecehart Talk given to the Berkeley sequencing supergroup in January 2012. <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/20120127ucbseqsupergroup-13499316041667-phpapp02-121011000152-phpapp02-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> Talk given to the Berkeley sequencing supergroup in January 2012.
Building a clinical genome interpretation services company from Reece Hart
]]> 1022 5 https://cdn.slidesharecdn.com/ss_thumbnails/20120127ucbseqsupergroup-13499316041667-phpapp02-121011000152-phpapp02-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Bio-IT 2010 Genome Commons /slideshow/bioit-2010-genome-commons/7783576 t34221500rhartv2-13041334375944-phpapp02
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]]> Fri, 29 Apr 2011 22:17:38 GMT /slideshow/bioit-2010-genome-commons/7783576 reecehart@slideshare.net(reecehart) Bio-IT 2010 Genome Commons reecehart <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/t34221500rhartv2-13041334375944-phpapp02-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br>
Bio-IT 2010 Genome Commons from Reece Hart
]]> 464 3 https://cdn.slidesharecdn.com/ss_thumbnails/t34221500rhartv2-13041334375944-phpapp02-thumbnail.jpg?width=120&height=120&fit=bounds presentation White http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 HVP Critical Assessment of Genome Interpretation /slideshow/hvp-critical-assessment-of-genome-interpretation/7783573 hvpcagipresentation-13041333488021-phpapp02
Note: CAGI occurred in Dec 2010, after I left Berkeley. Susanna Repo made the event happen and it would not have occurred without her.]]>
Note: CAGI occurred in Dec 2010, after I left Berkeley. Susanna Repo made the event happen and it would not have occurred without her.]]> Fri, 29 Apr 2011 22:16:38 GMT /slideshow/hvp-critical-assessment-of-genome-interpretation/7783573 reecehart@slideshare.net(reecehart) HVP Critical Assessment of Genome Interpretation reecehart Note: CAGI occurred in Dec 2010, after I left Berkeley. Susanna Repo made the event happen and it would not have occurred without her. <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/hvpcagipresentation-13041333488021-phpapp02-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> Note: CAGI occurred in Dec 2010, after I left Berkeley. Susanna Repo made the event happen and it would not have occurred without her.
HVP Critical Assessment of Genome Interpretation from Reece Hart
]]> 752 5 https://cdn.slidesharecdn.com/ss_thumbnails/hvpcagipresentation-13041333488021-phpapp02-thumbnail.jpg?width=120&height=120&fit=bounds presentation White http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Introduction to and Applications of Unison, an Open Source Database for Target Discovery /slideshow/introduction-to-and-applications-of-unison-an-open-source-database-for-target-discovery/7730546 ismbunison-13037613609025-phpapp01
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]]> Mon, 25 Apr 2011 14:56:29 GMT /slideshow/introduction-to-and-applications-of-unison-an-open-source-database-for-target-discovery/7730546 reecehart@slideshare.net(reecehart) Introduction to and Applications of Unison, an Open Source Database for Target Discovery reecehart <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/ismbunison-13037613609025-phpapp01-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br>
Introduction to and Applications of Unison, an Open Source Database for Target Discovery from Reece Hart
]]> 410 3 https://cdn.slidesharecdn.com/ss_thumbnails/ismbunison-13037613609025-phpapp01-thumbnail.jpg?width=120&height=120&fit=bounds presentation White http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Unison: Enabling easy, rapid, and comprehensive proteomic mining /slideshow/unison-enabling-easy-rapid-and-comprehensive-proteomic-mining/7730345 unisonucsfsfpug-1303759502812-phpapp02
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]]> Mon, 25 Apr 2011 14:29:42 GMT /slideshow/unison-enabling-easy-rapid-and-comprehensive-proteomic-mining/7730345 reecehart@slideshare.net(reecehart) Unison: Enabling easy, rapid, and comprehensive proteomic mining reecehart <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/unisonucsfsfpug-1303759502812-phpapp02-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br>
Unison: Enabling easy, rapid, and comprehensive proteomic mining from Reece Hart
]]> 425 4 https://cdn.slidesharecdn.com/ss_thumbnails/unisonucsfsfpug-1303759502812-phpapp02-thumbnail.jpg?width=120&height=120&fit=bounds presentation White http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 A Tour of Research Computing at Genentech /slideshow/a-tour-of-research-computing-at-genentech/7730341 bioit2009computingatgenentech-13037595016806-phpapp01
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]]> Mon, 25 Apr 2011 14:29:11 GMT /slideshow/a-tour-of-research-computing-at-genentech/7730341 reecehart@slideshare.net(reecehart) A Tour of Research Computing at Genentech reecehart <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/bioit2009computingatgenentech-13037595016806-phpapp01-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br>
A Tour of Research Computing at Genentech from Reece Hart
]]> 3856 5 https://cdn.slidesharecdn.com/ss_thumbnails/bioit2009computingatgenentech-13037595016806-phpapp01-thumbnail.jpg?width=120&height=120&fit=bounds presentation White http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Integrating Public and Private Data: Lessons Learned from Unison /slideshow/integrating-public-and-private-data-lessons-learned-from-unison/7730335 mmtc2009dataintegration-13037595008493-phpapp01
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]]> Mon, 25 Apr 2011 14:28:28 GMT /slideshow/integrating-public-and-private-data-lessons-learned-from-unison/7730335 reecehart@slideshare.net(reecehart) Integrating Public and Private Data: Lessons Learned from Unison reecehart <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/mmtc2009dataintegration-13037595008493-phpapp01-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br>
Integrating Public and Private Data: Lessons Learned from Unison from Reece Hart
]]> 566 3 https://cdn.slidesharecdn.com/ss_thumbnails/mmtc2009dataintegration-13037595008493-phpapp01-thumbnail.jpg?width=120&height=120&fit=bounds presentation White http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Unison: An Integrated Platform for Computational Biology Discovery /slideshow/unison-an-integrated-platform-for-computational-biology-discovery/7730330 unisonpsb2009talk-13037594997769-phpapp01
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]]> Mon, 25 Apr 2011 14:27:56 GMT /slideshow/unison-an-integrated-platform-for-computational-biology-discovery/7730330 reecehart@slideshare.net(reecehart) Unison: An Integrated Platform for Computational Biology Discovery reecehart <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/unisonpsb2009talk-13037594997769-phpapp01-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br>
Unison: An Integrated Platform for Computational Biology Discovery from Reece Hart
]]> 707 3 https://cdn.slidesharecdn.com/ss_thumbnails/unisonpsb2009talk-13037594997769-phpapp01-thumbnail.jpg?width=120&height=120&fit=bounds presentation White http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Mining for Novel TNF Ligands /slideshow/mining-for-novel-tnf-ligands/7730316 ismbtnf-13037594987071-phpapp02
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]]> Mon, 25 Apr 2011 14:26:47 GMT /slideshow/mining-for-novel-tnf-ligands/7730316 reecehart@slideshare.net(reecehart) Mining for Novel TNF Ligands reecehart <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/ismbtnf-13037594987071-phpapp02-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br>
Mining for Novel TNF Ligands from Reece Hart
]]> 302 4 https://cdn.slidesharecdn.com/ss_thumbnails/ismbtnf-13037594987071-phpapp02-thumbnail.jpg?width=120&height=120&fit=bounds presentation White http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 https://cdn.slidesharecdn.com/profile-photo-reecehart-48x48.jpg?cb=1585831391 I am computational biologist, genome data architect, and software engineer who combines technical depth and hands-on leadership with a penchant for strategic vision, tactical planning, and mentoring. My current focus is on creating an information ecosystem that enables patients to store, manage, investigate, and share their health information. I have focused my career on building computing systems -- including hardware architecture, data flow and process architecture, and end-user tools -- that enable rapid and reliable protein and genome analyses. At Genentech, my team built the protein annotation system used for nearly a decade and I managed Research Computing (serving 1,300 people wi... http://www.invitae.com/ https://cdn.slidesharecdn.com/ss_thumbnails/9fe8eedb-d34d-45cf-9e53-fe9309c5adf0-160409071442-thumbnail.jpg?width=320&height=320&fit=bounds reecehart/hgvs-2015-poster-hgvs-uta-variantanalyzer HGVS 2015 poster: hgvs... https://cdn.slidesharecdn.com/ss_thumbnails/clinicalsignificanceoftranscriptalignmentdiscrepancies-gne-20141016-141017000245-conversion-gate02-thumbnail.jpg?width=320&height=320&fit=bounds slideshow/clinical-significance-of-transcript-alignment-discrepancies-gne-20141016/40381883 Clinical significance ... https://cdn.slidesharecdn.com/ss_thumbnails/uskvcmajt9sanwbcgfse-140529184219-phpapp02-thumbnail.jpg?width=320&height=320&fit=bounds slideshow/hvp-2014-clinical-significance-of-transcript-alignment-discrepancies/35283905 The Clinical Significa...