際際滷shows by User: stwigger / http://www.slideshare.net/images/logo.gif 際際滷shows by User: stwigger / Fri, 14 May 2021 17:39:57 GMT 際際滷Share feed for 際際滷shows by User: stwigger Converged IT and Data Commons /slideshow/converged-it-and-data-commons/248314728 twigger-tri-con-2018-210514173957
A presentation I gave at the 2018 Molecular Med Tri-Con in San Francisco, February 2018. This addresses the general challenge of biomedical data management, some of the things to consider when evaluation solutions in this space, and concludes with a brief summary of some of the tools and platforms in this space.]]>
A presentation I gave at the 2018 Molecular Med Tri-Con in San Francisco, February 2018. This addresses the general challenge of biomedical data management, some of the things to consider when evaluation solutions in this space, and concludes with a brief summary of some of the tools and platforms in this space.]]> Fri, 14 May 2021 17:39:57 GMT /slideshow/converged-it-and-data-commons/248314728 stwigger@slideshare.net(stwigger) Converged IT and Data Commons stwigger A presentation I gave at the 2018 Molecular Med Tri-Con in San Francisco, February 2018. This addresses the general challenge of biomedical data management, some of the things to consider when evaluation solutions in this space, and concludes with a brief summary of some of the tools and platforms in this space. <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/twigger-tri-con-2018-210514173957-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> A presentation I gave at the 2018 Molecular Med Tri-Con in San Francisco, February 2018. This addresses the general challenge of biomedical data management, some of the things to consider when evaluation solutions in this space, and concludes with a brief summary of some of the tools and platforms in this space.
Converged IT and Data Commons from Simon Twigger
]]> 25 0 https://cdn.slidesharecdn.com/ss_thumbnails/twigger-tri-con-2018-210514173957-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 A Distributed Annotation Pipeline for MSSNG /slideshow/analyze-boulder-mssng/52304975 8wyayxpqqp6njk6ua2bq-signature-85f6f72e5262508bef87d5bf8d3b3b05c07ee76fe78c999f21b429dcd184eb31-poli-150901173937-lva1-app6891
Presented at the Analyze Boulder meet up in August, 2015, this presentation introduces the genome annotation pipeline built by BioTeam (https://bioteam.net) in support of Autism Speaks' MSSNG project. Built entirely on Google infrastructure it allows the MSSNG researchers to go from 10 Billion genome variants down to a more manageable 38 Million variants. These are then annotated with known biological information and integrated into the MSSNG Portal (https://research.mss.ng) for subsequent exploration and analysis.]]>
Presented at the Analyze Boulder meet up in August, 2015, this presentation introduces the genome annotation pipeline built by BioTeam (https://bioteam.net) in support of Autism Speaks' MSSNG project. Built entirely on Google infrastructure it allows the MSSNG researchers to go from 10 Billion genome variants down to a more manageable 38 Million variants. These are then annotated with known biological information and integrated into the MSSNG Portal (https://research.mss.ng) for subsequent exploration and analysis.]]> Tue, 01 Sep 2015 17:39:37 GMT /slideshow/analyze-boulder-mssng/52304975 stwigger@slideshare.net(stwigger) A Distributed Annotation Pipeline for MSSNG stwigger Presented at the Analyze Boulder meet up in August, 2015, this presentation introduces the genome annotation pipeline built by BioTeam (https://bioteam.net) in support of Autism Speaks' MSSNG project. Built entirely on Google infrastructure it allows the MSSNG researchers to go from 10 Billion genome variants down to a more manageable 38 Million variants. These are then annotated with known biological information and integrated into the MSSNG Portal (https://research.mss.ng) for subsequent exploration and analysis. <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/8wyayxpqqp6njk6ua2bq-signature-85f6f72e5262508bef87d5bf8d3b3b05c07ee76fe78c999f21b429dcd184eb31-poli-150901173937-lva1-app6891-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> Presented at the Analyze Boulder meet up in August, 2015, this presentation introduces the genome annotation pipeline built by BioTeam (https://bioteam.net) in support of Autism Speaks&#39; MSSNG project. Built entirely on Google infrastructure it allows the MSSNG researchers to go from 10 Billion genome variants down to a more manageable 38 Million variants. These are then annotated with known biological information and integrated into the MSSNG Portal (https://research.mss.ng) for subsequent exploration and analysis.
A Distributed Annotation Pipeline for MSSNG from Simon Twigger
]]> 557 10 https://cdn.slidesharecdn.com/ss_thumbnails/8wyayxpqqp6njk6ua2bq-signature-85f6f72e5262508bef87d5bf8d3b3b05c07ee76fe78c999f21b429dcd184eb31-poli-150901173937-lva1-app6891-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 DevOps and Automation for Bioinformaticians /slideshow/devops-and-automation-for-bioinformaticians/42763643 rctfedsqggkdf5rg0ri6-signature-48ff3a2bd661fe4cc084e5cd37b28cb1e57e89b81ffd91f36c53833931ebdbac-poli-141216103452-conversion-gate02
際際滷 deck from my recent presentation at the Rocky Mountain Bioinformatics Conference in Snowmass, CO.]]>
際際滷 deck from my recent presentation at the Rocky Mountain Bioinformatics Conference in Snowmass, CO.]]> Tue, 16 Dec 2014 10:34:52 GMT /slideshow/devops-and-automation-for-bioinformaticians/42763643 stwigger@slideshare.net(stwigger) DevOps and Automation for Bioinformaticians stwigger 際際滷 deck from my recent presentation at the Rocky Mountain Bioinformatics Conference in Snowmass, CO. <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/rctfedsqggkdf5rg0ri6-signature-48ff3a2bd661fe4cc084e5cd37b28cb1e57e89b81ffd91f36c53833931ebdbac-poli-141216103452-conversion-gate02-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> 際際滷 deck from my recent presentation at the Rocky Mountain Bioinformatics Conference in Snowmass, CO.
DevOps and Automation for Bioinformaticians from Simon Twigger
]]> 585 2 https://cdn.slidesharecdn.com/ss_thumbnails/rctfedsqggkdf5rg0ri6-signature-48ff3a2bd661fe4cc084e5cd37b28cb1e57e89b81ffd91f36c53833931ebdbac-poli-141216103452-conversion-gate02-thumbnail.jpg?width=120&height=120&fit=bounds presentation White http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 NCBO DBP /slideshow/ncbo-dbp/5297425 ncboprojectslideshare-100927095944-phpapp02
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]]> Mon, 27 Sep 2010 09:59:38 GMT /slideshow/ncbo-dbp/5297425 stwigger@slideshare.net(stwigger) NCBO DBP stwigger <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/ncboprojectslideshare-100927095944-phpapp02-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br>
NCBO DBP from Simon Twigger
]]> 411 2 https://cdn.slidesharecdn.com/ss_thumbnails/ncboprojectslideshare-100927095944-phpapp02-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 the iPad - an interface for Biologists? /slideshow/the-ipad-an-interface-for-biologists/4203085 ipadmay2010ss-100521110303-phpapp01
How might the new Apple iPad be useful for BIologists - not just for the apps but as a multi-touch interface to our machines, networks and more.]]>
How might the new Apple iPad be useful for BIologists - not just for the apps but as a multi-touch interface to our machines, networks and more.]]> Fri, 21 May 2010 09:40:41 GMT /slideshow/the-ipad-an-interface-for-biologists/4203085 stwigger@slideshare.net(stwigger) the iPad - an interface for Biologists? stwigger How might the new Apple iPad be useful for BIologists - not just for the apps but as a multi-touch interface to our machines, networks and more. <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/ipadmay2010ss-100521110303-phpapp01-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> How might the new Apple iPad be useful for BIologists - not just for the apps but as a multi-touch interface to our machines, networks and more.
the iPad - an interface for Biologists? from Simon Twigger
]]> 325 4 https://cdn.slidesharecdn.com/ss_thumbnails/ipadmay2010ss-100521110303-phpapp01-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Using Ontologies to accelerate candidate gene identification /slideshow/using-ontologies-to-accelerate-candidate-gene-identification/4177325 twiggeramiancboontologies10forss-100520125052-phpapp01
Copy of my slides from the AMIA Summit on Translational Medicine, 2010. This outlines our work with the National Center for Biomedical Ontology where we are using their tools to index biological data repositories and then enable the use of these annotations for further discoveries.]]>
Copy of my slides from the AMIA Summit on Translational Medicine, 2010. This outlines our work with the National Center for Biomedical Ontology where we are using their tools to index biological data repositories and then enable the use of these annotations for further discoveries.]]> Thu, 20 May 2010 09:26:25 GMT /slideshow/using-ontologies-to-accelerate-candidate-gene-identification/4177325 stwigger@slideshare.net(stwigger) Using Ontologies to accelerate candidate gene identification stwigger Copy of my slides from the AMIA Summit on Translational Medicine, 2010. This outlines our work with the National Center for Biomedical Ontology where we are using their tools to index biological data repositories and then enable the use of these annotations for further discoveries. <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/twiggeramiancboontologies10forss-100520125052-phpapp01-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> Copy of my slides from the AMIA Summit on Translational Medicine, 2010. This outlines our work with the National Center for Biomedical Ontology where we are using their tools to index biological data repositories and then enable the use of these annotations for further discoveries.
Using Ontologies to accelerate candidate gene identification from Simon Twigger
]]> 455 3 https://cdn.slidesharecdn.com/ss_thumbnails/twiggeramiancboontologies10forss-100520125052-phpapp01-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Semantic Web Approaches to Candidate Gene Identification /slideshow/semantic-web-approaches-to-candidate-gene-identification/3278635 twiggerpresentation-100225154559-phpapp02
際際滷s from my presentation at CSHALS 2010, Boston, February 25th 2010.]]>
際際滷s from my presentation at CSHALS 2010, Boston, February 25th 2010.]]> Thu, 25 Feb 2010 15:45:52 GMT /slideshow/semantic-web-approaches-to-candidate-gene-identification/3278635 stwigger@slideshare.net(stwigger) Semantic Web Approaches to Candidate Gene Identification stwigger 際際滷s from my presentation at CSHALS 2010, Boston, February 25th 2010. <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/twiggerpresentation-100225154559-phpapp02-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> 際際滷s from my presentation at CSHALS 2010, Boston, February 25th 2010.
Semantic Web Approaches to Candidate Gene Identification from Simon Twigger
]]> 739 5 https://cdn.slidesharecdn.com/ss_thumbnails/twiggerpresentation-100225154559-phpapp02-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Helping Haiti - a semantic web approach to crisis information management /slideshow/helping-haiti-a-semantic-web-approach-to-crisis-information-management/3157995 proteomicsmeetingfeb2010-100212101140-phpapp01
際際滷s & Notes (which can be shown below slides) from a recent presentation I gave outlining some ideas on how we could utilize some of the tools and approaches being developed in bio/clinical informatics to assist in data analysis and integration in crises such as the Haiti earthquake. This is a 'straw man', I can see reasons for and against this approach so I thought I'd throw it out for comment in the hope that others can help me refine it to the point where it could be useful.]]>
際際滷s & Notes (which can be shown below slides) from a recent presentation I gave outlining some ideas on how we could utilize some of the tools and approaches being developed in bio/clinical informatics to assist in data analysis and integration in crises such as the Haiti earthquake. This is a 'straw man', I can see reasons for and against this approach so I thought I'd throw it out for comment in the hope that others can help me refine it to the point where it could be useful.]]> Fri, 12 Feb 2010 10:11:20 GMT /slideshow/helping-haiti-a-semantic-web-approach-to-crisis-information-management/3157995 stwigger@slideshare.net(stwigger) Helping Haiti - a semantic web approach to crisis information management stwigger 際際滷s & Notes (which can be shown below slides) from a recent presentation I gave outlining some ideas on how we could utilize some of the tools and approaches being developed in bio/clinical informatics to assist in data analysis and integration in crises such as the Haiti earthquake. This is a 'straw man', I can see reasons for and against this approach so I thought I'd throw it out for comment in the hope that others can help me refine it to the point where it could be useful. <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/proteomicsmeetingfeb2010-100212101140-phpapp01-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> 際際滷s &amp; Notes (which can be shown below slides) from a recent presentation I gave outlining some ideas on how we could utilize some of the tools and approaches being developed in bio/clinical informatics to assist in data analysis and integration in crises such as the Haiti earthquake. This is a &#39;straw man&#39;, I can see reasons for and against this approach so I thought I&#39;d throw it out for comment in the hope that others can help me refine it to the point where it could be useful.
Helping Haiti - a semantic web approach to crisis information management from Simon Twigger
]]> 379 5 https://cdn.slidesharecdn.com/ss_thumbnails/proteomicsmeetingfeb2010-100212101140-phpapp01-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Using the NCBO Web Services for Concept Recognition and Ontology Annotation of Expression Datasets /slideshow/using-the-ncbo-web-services-for-concept-recognition-and-ontology-annotation-of-expression-datasets/2544507 twiggerintroppt-091120065615-phpapp02
This is the introductory slides for our poster at the 2009 Semantic Web Applications and Tools for Life Sciences workshop.]]>
This is the introductory slides for our poster at the 2009 Semantic Web Applications and Tools for Life Sciences workshop.]]> Fri, 20 Nov 2009 06:56:05 GMT /slideshow/using-the-ncbo-web-services-for-concept-recognition-and-ontology-annotation-of-expression-datasets/2544507 stwigger@slideshare.net(stwigger) Using the NCBO Web Services for Concept Recognition and Ontology Annotation of Expression Datasets stwigger This is the introductory slides for our poster at the 2009 Semantic Web Applications and Tools for Life Sciences workshop. <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/twiggerintroppt-091120065615-phpapp02-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> This is the introductory slides for our poster at the 2009 Semantic Web Applications and Tools for Life Sciences workshop.
Using the NCBO Web Services for Concept Recognition and Ontology Annotation of Expression Datasets from Simon Twigger
]]> 308 3 https://cdn.slidesharecdn.com/ss_thumbnails/twiggerintroppt-091120065615-phpapp02-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 Virtual Proteomics Analysis Cluster in the Cloud /slideshow/virtual-proteomics-analysis-cluster-in-the-cloud/2514273 twiggervipdac-091116175119-phpapp02
This talk was presented at Super Computing '09 in the Cloud Computing for Systems and Computational Biology workshop. It describes the proteomics analysis package we built using Amazon's cloud computing architecture. More information in our paper in J. Proteome Research http://pubs.acs.org/doi/abs/10.1021/pr800970z]]>
This talk was presented at Super Computing '09 in the Cloud Computing for Systems and Computational Biology workshop. It describes the proteomics analysis package we built using Amazon's cloud computing architecture. More information in our paper in J. Proteome Research http://pubs.acs.org/doi/abs/10.1021/pr800970z]]> Mon, 16 Nov 2009 17:51:15 GMT /slideshow/virtual-proteomics-analysis-cluster-in-the-cloud/2514273 stwigger@slideshare.net(stwigger) Virtual Proteomics Analysis Cluster in the Cloud stwigger This talk was presented at Super Computing '09 in the Cloud Computing for Systems and Computational Biology workshop. It describes the proteomics analysis package we built using Amazon's cloud computing architecture. More information in our paper in J. Proteome Research http://pubs.acs.org/doi/abs/10.1021/pr800970z <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/twiggervipdac-091116175119-phpapp02-thumbnail.jpg?width=120&amp;height=120&amp;fit=bounds" /><br> This talk was presented at Super Computing &#39;09 in the Cloud Computing for Systems and Computational Biology workshop. It describes the proteomics analysis package we built using Amazon&#39;s cloud computing architecture. More information in our paper in J. Proteome Research http://pubs.acs.org/doi/abs/10.1021/pr800970z
Virtual Proteomics Analysis Cluster in the Cloud from Simon Twigger
]]> 585 5 https://cdn.slidesharecdn.com/ss_thumbnails/twiggervipdac-091116175119-phpapp02-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post http://activitystrea.ms/schema/1.0/posted 0 https://cdn.slidesharecdn.com/profile-photo-stwigger-48x48.jpg?cb=1621014381 bioteam.net https://cdn.slidesharecdn.com/ss_thumbnails/twigger-tri-con-2018-210514173957-thumbnail.jpg?width=320&height=320&fit=bounds slideshow/converged-it-and-data-commons/248314728 Converged IT and Data ... https://cdn.slidesharecdn.com/ss_thumbnails/8wyayxpqqp6njk6ua2bq-signature-85f6f72e5262508bef87d5bf8d3b3b05c07ee76fe78c999f21b429dcd184eb31-poli-150901173937-lva1-app6891-thumbnail.jpg?width=320&height=320&fit=bounds slideshow/analyze-boulder-mssng/52304975 A Distributed Annotati... https://cdn.slidesharecdn.com/ss_thumbnails/rctfedsqggkdf5rg0ri6-signature-48ff3a2bd661fe4cc084e5cd37b28cb1e57e89b81ffd91f36c53833931ebdbac-poli-141216103452-conversion-gate02-thumbnail.jpg?width=320&height=320&fit=bounds slideshow/devops-and-automation-for-bioinformaticians/42763643 DevOps and Automation ...