BioJS introduction
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This document discusses Bi JS, a collection of JavaScript components for presenting biological information that follow common guidelines. It describes how Bi JS components are designed and layered, including data representation, code, dependencies, and style. The document outlines benefits for both creating and using Bi JS components such as sharing development, enhancing visibility, having a common structure, and more. It provides two use case examples and information on the BioJS project members and collaborators.
BioJS introduction
- 1. EMBL-EBI Rafael C. Jimenez 2013-08-20 Bi JS Introduction
- 2. EMBL-EBI 13.12.20182 A collection of JavaScript components following a common guideline to present biological information Bi JS
- 4. EMBL-EBI 13.12.20184 http://www.ebi.ac.uk/Tools/biojs/registry/ collection of components use https://github.com/biojs/biojs guidelines (specification) createBi JS ´ source code & documentationComponents registry
- 5. EMBL-EBI 13.12.20185 Input Output Aim Sketch Options Methods Events Style Biologists Biologists + Developer Developer Developer BioJS component BioJS Design Coding Specification Developer Registry Source code Release API doc Bi JS
- 6. EMBL-EBI Component layers 13.12.20186 Data representation JavaScript code Dependencies Style ? Constructor ? Options ? Methods ? Events ? Comments ? Examples ? Dependencies ? Documentation Registry + API doc Bi JS
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- 24. EMBL-EBI Benefits ? Share development ? Enhance the visibility of your widget ? Make components not just for you but for the community ? Isolate visualization from your web framework ? Have a minimal common code structure ? Components easy to take over since they need to be well documented ? Easy to add functionality by extending a component ? Out of the box API documentation for your component 13.12.201824 create Bi JS
- 25. EMBL-EBI Benefits ? A registry to find a list components ? Components including an example to see and test ? Different components which are installed same way ? A common API documentation for all the components ? Easy to add functionality by extending a component ? Visualize like other groups/institutions ? Adapt the component to your visual styles 13.12.201825 use Bi JS
- 26. EMBL-EBI Benefits ? Follow minimal common guidelines ? Aim at having common visualizations ? Encourage developers to work in common implementations ? Let the community visualize like your institution does ? Make people aware of what components are developed 13.12.201826 as organization Bi JS
- 27. EMBL-EBI Bi JS Use case 1 C Predict protein
- 30. EMBL-EBI Bi JS Use case 2 C COPA
- 33. EMBL-EBI The BioJS project members and collaborators http://code.google.com/p/biojs/ biojs@googlegroups.com Support from ? UniProt ? EBI web development team ? The Proteomics Services Team Thanks to: Jhon Gomez johncar@gmail.com
- 34. EMBL-EBI Technology overview 13.12.201834 JavaScript Dependencies (JavaScript libraries, proxies, applets, ´) SVN Web server Maven PHP Component X X Registry X X X API doc X Source code X