My interest lies in algorithms and probabilistic models and their applications in bioinformatics, with a focus in population genetics. My current ongoing projects are:
- approximation of the allele frequency distribution using an extension of the beta distribution and inferences based on this approximation
- inference of the distribution of fitness effects from polymorphism and divergence data, using an extend Poisson random field
I have been previously involved in working on
- inferring pairwise IBD in sequence data,
- using coalescence hidden Markov models for inferring population parameters,
- motif discovery in ranked lists of sequences,
- patterns in the sequence of hidden states of...
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