�ݺ�ߣshows by User: leclercfl

�ݺ�ߣshows by User: leclercfl / http://www.slideshare.net/images/logo.gif �ݺ�ߣshows by User: leclercfl / Thu, 14 Feb 2019 22:56:07 GMT �ݺ�ߣShare feed for �ݺ�ߣshows by User: leclercfl Self-Assembly & Catalysis by HHR from ASBVd(-) /slideshow/selfassembly-catalysis-by-hhr-from-asbvd/131839305 seadim11conferenciafleclerclite-190214225607
SEADIM11 Conference]]>
SEADIM11 Conference]]> Thu, 14 Feb 2019 22:56:07 GMT /slideshow/selfassembly-catalysis-by-hhr-from-asbvd/131839305 leclercfl@slideshare.net(leclercfl) Self-Assembly & Catalysis by HHR from ASBVd(-) leclercfl SEADIM11 Conference <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/seadim11conferenciafleclerclite-190214225607-thumbnail.jpg?width=120&height=120&fit=bounds" /> SEADIM11 Conference

Self-Assembly & Catalysis by HHR from ASBVd(-) from Fabrice Leclerc

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0 Viroids and the RNA World /slideshow/viroids-and-the-rna-world/131808556 viroidshhrrnaworld-190214184351
from genomic scale (RNA) to atomic scale (ribozyme)]]>
from genomic scale (RNA) to atomic scale (ribozyme)]]> Thu, 14 Feb 2019 18:43:51 GMT /slideshow/viroids-and-the-rna-world/131808556 leclercfl@slideshare.net(leclercfl) Viroids and the RNA World leclercfl from genomic scale (RNA) to atomic scale (ribozyme) <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/viroidshhrrnaworld-190214184351-thumbnail.jpg?width=120&height=120&fit=bounds" /> from genomic scale (RNA) to atomic scale (ribozyme)

Viroids and the RNA World from Fabrice Leclerc

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0 Visualization of RNA 2D Structures - Structure/function relationships of H/ACA motifs: Analysis & Prediction /slideshow/visu2013-rna2-dfl/50274717 visu2013rna2dfl-150707204022-lva1-app6892
VISU2013: IBPC, Paris - November 6 Secondary structure diagrams are essential, in RNA biology, to critically assess the credibility of functional hypotheses, and communicate them visually as drafts or finalized publication-ready figures. While many tools are currently available to automate the production of such diagrams, their capacities are usually partial, making it difficult for a user to decide which tool to use in a given situation. We present major existing representations using available free tools (jViz.RNA, the PseudoViewer, RILogo, R-chie, RNAplot, R2R and VARNA) which may be used for the production of expressive publication- quality illustrations featuring the RNA secondary structure. We propose specific approaches to visualize the secondary structure in the presence of probing data, pseudoknots, RNA-RNA interactions and evolutionary data. Some of these approaches are illustrated for the analysis and prediction of the structure/function relationships of H/ACA motifs.]]>
VISU2013: IBPC, Paris - November 6 Secondary structure diagrams are essential, in RNA biology, to critically assess the credibility of functional hypotheses, and communicate them visually as drafts or finalized publication-ready figures. While many tools are currently available to automate the production of such diagrams, their capacities are usually partial, making it difficult for a user to decide which tool to use in a given situation. We present major existing representations using available free tools (jViz.RNA, the PseudoViewer, RILogo, R-chie, RNAplot, R2R and VARNA) which may be used for the production of expressive publication- quality illustrations featuring the RNA secondary structure. We propose specific approaches to visualize the secondary structure in the presence of probing data, pseudoknots, RNA-RNA interactions and evolutionary data. Some of these approaches are illustrated for the analysis and prediction of the structure/function relationships of H/ACA motifs.]]> Tue, 07 Jul 2015 20:40:22 GMT /slideshow/visu2013-rna2-dfl/50274717 leclercfl@slideshare.net(leclercfl) Visualization of RNA 2D Structures - Structure/function relationships of H/ACA motifs: Analysis & Prediction leclercfl VISU2013: IBPC, Paris - November 6 Secondary structure diagrams are essential, in RNA biology, to critically assess the credibility of functional hypotheses, and communicate them visually as drafts or finalized publication-ready figures. While many tools are currently available to automate the production of such diagrams, their capacities are usually partial, making it difficult for a user to decide which tool to use in a given situation. We present major existing representations using available free tools (jViz.RNA, the PseudoViewer, RILogo, R-chie, RNAplot, R2R and VARNA) which may be used for the production of expressive publication- quality illustrations featuring the RNA secondary structure. We propose specific approaches to visualize the secondary structure in the presence of probing data, pseudoknots, RNA-RNA interactions and evolutionary data. Some of these approaches are illustrated for the analysis and prediction of the structure/function relationships of H/ACA motifs. <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/visu2013rna2dfl-150707204022-lva1-app6892-thumbnail.jpg?width=120&height=120&fit=bounds" /> VISU2013: IBPC, Paris - November 6 Secondary structure diagrams are essential, in RNA biology, to critically assess the credibility of functional hypotheses, and communicate them visually as drafts or finalized publication-ready figures. While many tools are currently available to automate the production of such diagrams, their capacities are usually partial, making it difficult for a user to decide which tool to use in a given situation. We present major existing representations using available free tools (jViz.RNA, the PseudoViewer, RILogo, R-chie, RNAplot, R2R and VARNA) which may be used for the production of expressive publication- quality illustrations featuring the RNA secondary structure. We propose specific approaches to visualize the secondary structure in the presence of probing data, pseudoknots, RNA-RNA interactions and evolutionary data. Some of these approaches are illustrated for the analysis and prediction of the structure/function relationships of H/ACA motifs.

Visualization of RNA 2D Structures - Structure/function relationships of H/ACA motifs: Analysis & Prediction from Fabrice Leclerc

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0 H/ACA(like) sRNA in Archaea /slideshow/hacalike-srna-in-archaea/50274306 hacalikearchaea-150707202917-lva1-app6892
Presentation at the GDR Archaea (Institut Pasteur, Paris. May 19): Revisiting the Structure/Function Relationships of H/ACA guide RNAs in Archaea from Transcriptomics and Computational RNomics ]]>
Presentation at the GDR Archaea (Institut Pasteur, Paris. May 19): Revisiting the Structure/Function Relationships of H/ACA guide RNAs in Archaea from Transcriptomics and Computational RNomics ]]> Tue, 07 Jul 2015 20:29:16 GMT /slideshow/hacalike-srna-in-archaea/50274306 leclercfl@slideshare.net(leclercfl) H/ACA(like) sRNA in Archaea leclercfl Presentation at the GDR Archaea (Institut Pasteur, Paris. May 19): Revisiting the Structure/Function Relationships of H/ACA guide RNAs in Archaea from Transcriptomics and Computational RNomics <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/hacalikearchaea-150707202917-lva1-app6892-thumbnail.jpg?width=120&height=120&fit=bounds" /> Presentation at the GDR Archaea (Institut Pasteur, Paris. May 19): Revisiting the Structure/Function Relationships of H/ACA guide RNAs in Archaea from Transcriptomics and Computational RNomics

H/ACA(like) sRNA in Archaea from Fabrice Leclerc

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0 Computational Enzymology of Ribozymes (from metal-ion to nucleobase catalysis and back ?) /slideshow/computational-enzymology-of-ribozymes-from-metalion-to-nucleobase-catalysis-and-back/13799735 ribozymes-120730050624-phpapp02
the future of RNA worlds: seminar given at ANBIOφ / UPMC (Paris, France) on February 24th 2012 (http://www.scribd.com/doc/74685839/the-future-of-RNA-worlds)]]>
the future of RNA worlds: seminar given at ANBIOφ / UPMC (Paris, France) on February 24th 2012 (http://www.scribd.com/doc/74685839/the-future-of-RNA-worlds)]]> Mon, 30 Jul 2012 05:06:23 GMT /slideshow/computational-enzymology-of-ribozymes-from-metalion-to-nucleobase-catalysis-and-back/13799735 leclercfl@slideshare.net(leclercfl) Computational Enzymology of Ribozymes (from metal-ion to nucleobase catalysis and back ?) leclercfl the future of RNA worlds: seminar given at ANBIOφ / UPMC (Paris, France) on February 24th 2012 (http://www.scribd.com/doc/74685839/the-future-of-RNA-worlds) <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/ribozymes-120730050624-phpapp02-thumbnail.jpg?width=120&height=120&fit=bounds" /> the future of RNA worlds: seminar given at ANBIOφ / UPMC (Paris, France) on February 24th 2012 (http://www.scribd.com/doc/74685839/the-future-of-RNA-worlds)

Computational Enzymology of Ribozymes (from metal-ion to nucleobase catalysis and back ?) from Fabrice Leclerc

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0 https://cdn.slidesharecdn.com/profile-photo-leclercfl-48x48.jpg?cb=1672739997 I developp and apply computational and modeling approaches to understand the structure/function relationships of RNAs at different levels of complexity and representations (sequence, 2D and 3D structure). My research interests include: RNomics (identification and characterization of non-coding RNA genes), computational enzymology (elucidate the catalysis by self-cleaving ribozymes), docking (model and predict RNA/protein interactions). Specialties: RNA, molecular modeling, bioinformatics, theoretical and computational (bio)chemistry, computational biology and RNomics rnomics.wordpress.com https://cdn.slidesharecdn.com/ss_thumbnails/seadim11conferenciafleclerclite-190214225607-thumbnail.jpg?width=320&height=320&fit=bounds slideshow/selfassembly-catalysis-by-hhr-from-asbvd/131839305 Self-Assembly & Catal... https://cdn.slidesharecdn.com/ss_thumbnails/viroidshhrrnaworld-190214184351-thumbnail.jpg?width=320&height=320&fit=bounds slideshow/viroids-and-the-rna-world/131808556 Viroids and the RNA World https://cdn.slidesharecdn.com/ss_thumbnails/visu2013rna2dfl-150707204022-lva1-app6892-thumbnail.jpg?width=320&height=320&fit=bounds slideshow/visu2013-rna2-dfl/50274717 Visualization of RNA 2...