�ݺ�ߣ

Scrip&ng
?e
?RailsEngines
?possono
?
coesistere
??
?
Ruby
?Social
?Club
?
Raoul
?J.P.
?Bonnal
?
r@bioruby.org
?
h=ps://github.com/helios/bioruby-?�\gem
?
h=p://bioruby.open-?�\bio.org/
?
?
Milano,
?24
?Febbraio
?2011
?

Ruby,
?dove?
?
Web
?

Ambien&
?
di
?
U&lizzo
?
Scienza
? Admin
?

Ruby,
?dove?
?

Web
?
Web
?

Rails
?
Ambien&
?
di
? Cool.io
?
U&lizzo
?
Scienza
? Admin
?

Sinatra
?

Ruby,
?dove?
?
Web
?

Ambien&
?
di
?
U&lizzo
?
Scienza
? Admin
?
Admin
?

Capistrano
?

Ruby,
?dove?
?
Web
?
BioRuby
?

SciRuby
?
Ambien&
?
di
?
U&lizzo
?
Scienza
?
Scienza
? Admin
?

Graphics/
PloPng
?

BioRuby
?
conceP
?
?? La
?bioinforma&ca
?��
?una
?disciplina
?scien&?ca
?
dedicata
?alla
?risoluzione
?di
?problemi
?biologici
?a
?
livello
?molecolare
?con
?metodo
?informa&ci
?
?
?? BioRuby
?��
?una
?libreria,
?scri=a
?completamente
?
in
?Ruby,
?il
?cui
?scopo
?��
?quello
?di
?ges&re
?alcuni
?
aspeP
?della
?bioinforma&ca
?

h=p://it.wikipedia.org/wiki/Bioinforma&ca
?
h=p://bioruby.open-?�\bio.org/
?

BioRuby
?
contribuire
?

Sviluppatori
?molto
?conserva&vi
?
in
?realt��
?acce=ano
?ma
?ci
?vuole
?tempo
?

Il
?proge=o
?BioGem
?

Maggiore
?necessit��
?di
?apertura
?verso
?il
?fresh
?
code,
?che
?non
?sar��
?bug
?free
?ma
?almeno
?c��
?

Script
?e
?Engine
?
In
?BioInforma&ca
?spesso
?chi
?produce
?da&
?non
?si
?

?preoccupa
?di
?come
?ques&
?verranno
?visualizza&
?

Script
?e
?Engine
?
In
?BioInforma&ca
?spesso
?chi
?produce
?da&
?non
?si
?

?preoccupa
?di
?come
?ques&
?verranno
?visualizza&,
?

?almeno
?non
?subito��
?
geek.take_rest if boss.watch? results!
class Boss!
def watch?(result)!
result.fancy?!
end!
end!
class Result!
def fancy?!
(kind_of? GorgeousImage) || has_cool_interface? !
end!
end!

Script
?e
?Engine
?
Oppure
?li
?analizza
?con
?strumen&
?di?eren&,
?che
?
per��
?spesso
?non
?o?rono
?molta
??essibilit��
?

Script
?e
?Engine
?
Quindi
?che
?fare
??
?
30
?+
?1
?=
?31
?

Solo
?che
?quell��
?UNO
?crea
?mol&
?pi��
?problemi
?di
?
quanto
?si
?pensi
?
�C? Web
?Applica&on,
?che
?richiede
?tempo
?
�C? Riusabilit��:
?possibile
?proliferazione
?di
?applicazioni
?
�C? Mantenibilit��
?
�C? E��
?slegato
?dalla
?libreria
?che
?produce/ges&sce
?i
?da&?
?

Perch��
?mischiare
?Script
?e
?Engine?
?
?? U&lizzare
?database
?sia
?da
?parte
?di
?script
?che
?da
?
parte
?di
?uten&
?��web��.
?
�C? script:
?solitamente
?macinano
?da&
?
�C? web:
?
?
?? vuole
?esplorare
?i
?da&
?sia
?quelli
?in
?input
?che
?il
?risultato
?
?? Services
?
?
?? Credo
?che
?mantenere
?tu=o
?in
?un
?unico
?posto
?sia
?
meno
?dispersivo
?e
?di
?solito
?chi
?sviluppa
?il
?livello
?di
?
analisi/database
?POI
?si
?preoccupa
?anche
?di
?
sviluppare
?l��interfaccia
?

Il
?Generatore1
?

Bundler,
?Jeweler
?
?
+
?
Hacking
?

Il
?Generatore2
?

$ biogem --with-engine=joke fake! !create !config/routes.rb!
!create !.gitignore! Jeweler has prepared your gem in bioruby-fake!
!create !Rakefile! Fetching source index for http://rubygems.org/!
!create !Gemfile! Could not reach rubygems repository http://
!create !LICENSE.txt! rubygems.org/!
!create !README.rdoc! Using rake (0.8.7) !
!create !.document! Using bio (1.4.1) !
!create !lib! Using bundler (1.0.10) !
!create !lib/bio-fake.rb! Using git (1.2.5) !
!create !test! Using jeweler (1.5.2) !
!create !test/helper.rb! Using rcov (0.9.9) !
!create !test/test_bio-fake.rb! Using shoulda (2.11.3) !
!create !db! Your bundle is complete! Use `bundle show
[gemname]` to see where a bundled gem is
!create !app! installed.!
!create !app/controllers! rake version:write!
!create !app/views! (in /Users/bonnalraoul/Documents/Develop/
!create !app/helpers! prototypes/bioruby-fake)!
!create !config! Updated version: 0.0.0!
!create !lib/bio-fake-engine.rb! rake gemspec!
!create !lib/bio-fake.rb! (in /Users/bonnalraoul/Documents/Develop/
! prototypes/bioruby-fake)!
* *!
* Remember to require this library in the Gemfile of your Rails applicat *! Generated: bio-fake.gemspec!
* ion. *! bio-fake.gemspec is valid.!
* Please take a look at bioruby-fake/lib/bio-fake-engine.rb file for an *!
* example of how integrate your engine into a rails application. *!
* Thanks! *!
* *!
!

Engine
?
require 'bio-fake'!
require 'rails'!

module BioFake!
class Engine < Rails::Engine!
# Config defaults!
config.widget_factory_name = "default factory name"!
config.mount_at = '/'!

# # Load rake tasks!
# rake_tasks do!
# load File.join(File.dirname(__FILE__), 'rails/railties/tasks.rake')!
# end !
# Check the gem config!

initializer "check config" do |app|!
# make sure mount_at ends with trailing slash!
config.mount_at += '/' unless config.mount_at.last == '/'!
end!

initializer "static assets" do |app|!
app.middleware.use ::ActionDispatch::Static, "#{root}/public"!
end!
paths.app.models << "lib"!
end!
end! h=p://keithschacht.com/crea&ng-?�\a-?�\rails-?�\3-?�\engine-?�\plugin-?�\gem/
?

Engine
?Rou&ng
?
Rails.application.routes.draw do |map|!

mount_at = BioFake::Engine.config.mount_at!

#ROUTES from code below:!
# YourPathToTheControllerFiles = ��bio/kb/gex��!
# OtherControllerName = slice!
# !
# gex /gex(.:format) {:controller=>"bio/kb/gex/populations", :action=>"index"}!
# filter_population GET /gex/populations/:id/filter(.:format) {:action=>"filter", :controller=>"bio/kb/gex/populations"}!
# populations GET /gex/populations(.:format) {:action=>"index", :controller=>"bio/kb/gex/populations"}!
# population GET /gex/populations/:id(.:format) {:action=>"show", :controller=>"bio/kb/gex/populations"}!
# samples GET /gex/samples(.:format) {:action=>"index", :controller=>"bio/kb/gex/samples"}!
# sample GET /gex/samples/:id(.:format) {:action=>"show", :controller=>"bio/kb/gex/samples"}!
# slices GET /gex/slices(.:format) {:action=>"index", :controller=>"bio/kb/gex/slices"}!
# slice GET /gex/slices/:id(.:format) {:action=>"show", :controller=>"bio/kb/gex/slices��}!

scope mount_at, :module=>'SUBSITITUTE YourPathToTheControllerFiles'do !
resources :ControllerName, :only => [ :index, :show] do !
member do !
get :example!
end #member !
end #resource!
resources :SUBSTITUTEOtherControllerName, :only => [ :index, :show]!
end #scope!
end!

Rails
?Ini&alizer
?
Codice
?che
?deve
?essere
?aggiunto
?all��applicazione
?

# config/initializers/bio-fake.rb!
# create a file called bio-fake.rb!
# you can change the mount point of you engine, using option!
# --with_engine=namespace like http://YourDomain:port/YourMountPoint!
# Otherwise, if you want your RailsEngine to be called at root level, leave everything as it now,
without that file.!

module BioFake!
class Engine < Rails::Engine!
config.mount_at = '/joke��!
end!
end!

Scrip&ng
?e
?RailsEngines
?possono
?
coesistere
??
?
SI
?

Da
?risolvere
?
?? Come
?posso
?ges&re
?le
?interdipendenze
?tra
?
database
?in
?gemme
?di?eren&?
?
?? I/O
?di
?da&
?in
?formato
?tabellare:
?tab,
?csv
?
�C? Conviene
?me=ere
?in
?db
?classici
??
?
�C? NOSQL
??
?
�C? Tenere
?I
??le?
?
?? I
?database
?spesso
?sono
?legacy
?e
?devono
?
interagire
?tramite
?le
?gemme
?
�C? SQLite3
?per
?la
?distribuzione
?

Ringraziamen&
?
Bioruby
? P.T.P.
?
?? Toshiaki
?Katayama
? ?? Francesco
?Strozzi
?
?? Pjotr
?Prins
?

Fondazione
?INGM
?
?? Massimiliano
?Pagani
?
?? Riccardo
?L.
?Rossi
?
?? Valeria
?Ranzani
?

�ݺ�ߣ

BioRuby e gli Engines di Rails -ITA-

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