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MapReduce Algorithm Design
Adapted from Jimmy Lins slides
MapReduce: Recap
 Programmers must specify:
map (k, v)  <k, v>*
reduce (k, v)  <k, v>*
 All values with the same key are reduced together
 Optionally, also:
partition (k, number of partitions)  partition for k
 Often a simple hash of the key, e.g., hash(k) mod n
 Divides up key space for parallel reduce operations
combine (k, v)  <k, v>*
 Mini-reducers that run in memory after the map phase
 Used as an optimization to reduce network traffic
 The execution framework handles everything else
Everything Else
 The execution framework handles everything else
 Scheduling: assigns workers to map and reduce tasks
 Data distribution: moves processes to data
 Synchronization: gathers, sorts, and shuffles intermediate data
 Errors and faults: detects worker failures and restarts
 Limited control over data and execution flow
 All algorithms must expressed in m, r, c, p
 You dont know:
 Where mappers and reducers run
 When a mapper or reducer begins or finishes
 Which input a particular mapper is processing
 Which intermediate key a particular reducer is processing
combine
combine combine combine
b
a 1 2 c 9 a c
5 2 b c
7 8
partition partition partition partition
map
map map map
k1 k2 k3 k4 k5 k6
v1 v2 v3 v4 v5 v6
b
a 1 2 c c
3 6 a c
5 2 b c
7 8
Shuffle and Sort: aggregate values by keys
reduce reduce reduce
a 1 5 b 2 7 c 2 9 8
r1 s1 r2 s2 r3 s3
Tools for Synchronization
 Cleverly-constructed data structures
 Bring partial results together
 Sort order of intermediate keys
 Control order in which reducers process keys
 Partitioner
 Control which reducer processes which keys
 Preserving state in mappers and reducers
 Capture dependencies across multiple keys and
values
Preserving State
Mapper object
configure
map
close
state
one object per task
Reducer object
configure
reduce
close
state
one call per input
key-value pair
one call per
intermediate key
API initialization hook
API cleanup hook
Scalable Hadoop Algorithms: Themes
 Avoid object creation
 Inherently costly operation
 Garbage collection
 Avoid buffering
 Limited heap size
 Works for small datasets, but wont scale!
Importance of Local Aggregation
 Ideal scaling characteristics:
 Twice the data, twice the running time
 Twice the resources, half the running time
 Why cant we achieve this?
 Synchronization requires communication
 Communication kills performance
 Thus avoid communication!
 Reduce intermediate data via local aggregation
 Combiners can help
Shuffle and Sort
Mapper
Reducer
other mappers
other reducers
circular buffer
(in memory)
spills (on disk)
merged spills
(on disk)
intermediate files
(on disk)
Combiner
Combiner
Word Count: Baseline
Whats the impact of combiners?
Word Count: Version 1
Are combiners still needed?
Word Count: Version 2
Are combiners still needed?
Design Pattern for Local Aggregation
 In-mapper combining
 Fold the functionality of the combiner into the
mapper by preserving state across multiple map calls
 Advantages
 Speed
 Why is this faster than actual combiners?
 Disadvantages
 Explicit memory management required
 Potential for order-dependent bugs
Combiner Design
 Combiners and reducers share same method
signature
 Sometimes, reducers can serve as combiners
 Often, not
 Remember: combiner are optional optimizations
 Should not affect algorithm correctness
 May be run 0, 1, or multiple times
 Example: find average of all integers associated
with the same key
Computing the Mean: Version 1
Why cant we use reducer as combiner?
Computing the Mean: Version 2
Why doesnt this work?
Computing the Mean: Version 3
Fixed?
Computing the Mean: Version 4
Are combiners still needed?
What if the S & C are too large?
Algorithm Design: Running Example
 Term co-occurrence matrix for a text collection
 M = N x N matrix (N = vocabulary size)
 Mij: number of times i and j co-occur in some context
(for concreteness, lets say context = sentence)
 Why?
 Distributional profiles as a way of measuring semantic
distance
 Semantic distance useful for many language
processing tasks
MapReduce: Large Counting Problems
 Term co-occurrence matrix for a text collection
= specific instance of a large counting problem
 A large event space (number of terms)
 A large number of observations (the collection itself)
 Goal: keep track of interesting statistics about the
events
 Basic approach
 Mappers generate partial counts
 Reducers aggregate partial counts
How do we aggregate partial counts efficiently?
First Try: Pairs
 Each mapper takes a sentence:
 Generate all co-occurring term pairs
 For all pairs, emit (a, b)  count
 Reducers sum up counts associated with these
pairs
 Use combiners!
Pairs: Pseudo-Code
Pairs Analysis
 Advantages
 Easy to implement, easy to understand
 Disadvantages
 Lots of pairs to sort and shuffle around (upper
bound?)
 Not many opportunities for combiners to work
Another Try: Stripes
 Idea: group together pairs into an associative array
 Each mapper takes a sentence:
 Generate all co-occurring term pairs
 For each term, emit a  { b: countb, c: countc, d: countd  }
 Reducers perform element-wise sum of associative arrays
(a, b)  1
(a, c)  2
(a, d)  5
(a, e)  3
(a, f)  2
a  { b: 1, c: 2, d: 5, e: 3, f: 2 }
a  { b: 1, d: 5, e: 3 }
a  { b: 1, c: 2, d: 2, f: 2 }
a  { b: 2, c: 2, d: 7, e: 3, f: 2 }
+
Stripes: Pseudo-Code
Stripes Analysis
 Advantages
 Far less sorting and shuffling of key-value pairs
 Can make better use of combiners
 Disadvantages
 More difficult to implement
 Underlying object more heavyweight
 Fundamental limitation in terms of size of event
space
Cluster size: 38 cores
Data Source: Associated Press Worldstream (APW) of the English Gigaword Corpus (v3),
which contains 2.27 million documents (1.8 GB compressed, 5.7 GB uncompressed)
Questions
 Can you combine Stripes approach with in-
mapper combiner?
 What if the stripes are too large?
Relative Frequencies
 How do we estimate relative frequencies from
counts?
 Why do we want to do this?
 How do we do this with MapReduce?



'
)
'
,
(
count
)
,
(
count
)
(
count
)
,
(
count
)
|
(
B
B
A
B
A
A
B
A
A
B
f
f(B|A): Stripes
 Easy!
 One pass to compute (a, *)
 Another pass to directly compute f(B|A)
a  {b1:3, b2 :12, b3 :7, b4 :1,  }
f(B|A): Pairs
 For this to work:
 Must emit extra (a, *) for every bn in mapper
 Must make sure all as get sent to same reducer (use partitioner)
 Must make sure (a, *) comes first (define sort order)
 Must hold state in reducer across different key-value pairs
(a, b1)  3
(a, b2)  12
(a, b3)  7
(a, b4)  1

(a, *)  32
(a, b1)  3 / 32
(a, b2)  12 / 32
(a, b3)  7 / 32
(a, b4)  1 / 32

Reducer holds this value in memory
Order Inversion
 Common design pattern
 Computing relative frequencies requires marginal counts
 But marginal cannot be computed until you see all counts
 Buffering is a bad idea!
 Trick: getting the marginal counts to arrive at the reducer
before the joint counts
 Optimizations
 Apply in-memory combining pattern to accumulate
marginal counts
 Should we apply combiners?
Synchronization: Pairs vs. Stripes
 Approach 1: turn synchronization into an ordering problem
 Sort keys into correct order of computation
 Partition key space so that each reducer gets the appropriate set
of partial results
 Hold state in reducer across multiple key-value pairs to perform
computation
 Illustrated by the pairs approach
 Approach 2: construct data structures that bring partial
results together
 Each reducer receives all the data it needs to complete the
computation
 Illustrated by the stripes approach
Recap: Tools for Synchronization
 Cleverly-constructed data structures
 Bring data together
 Sort order of intermediate keys
 Control order in which reducers process keys
 Partitioner
 Control which reducer processes which keys
 Preserving state in mappers and reducers
 Capture dependencies across multiple keys and
values
Issues and Tradeoffs
 Number of key-value pairs
 Object creation overhead
 Time for sorting and shuffling pairs across the network
 Size of each key-value pair
 De/serialization overhead
 Local aggregation
 Opportunities to perform local aggregation varies
 Combiners make a big difference
 Combiners vs. in-mapper combining
 RAM vs. disk vs. network

More Related Content

design mapping lecture6-mapreducealgorithmdesign.ppt

  • 1. MapReduce Algorithm Design Adapted from Jimmy Lins slides
  • 2. MapReduce: Recap Programmers must specify: map (k, v) <k, v>* reduce (k, v) <k, v>* All values with the same key are reduced together Optionally, also: partition (k, number of partitions) partition for k Often a simple hash of the key, e.g., hash(k) mod n Divides up key space for parallel reduce operations combine (k, v) <k, v>* Mini-reducers that run in memory after the map phase Used as an optimization to reduce network traffic The execution framework handles everything else
  • 3. Everything Else The execution framework handles everything else Scheduling: assigns workers to map and reduce tasks Data distribution: moves processes to data Synchronization: gathers, sorts, and shuffles intermediate data Errors and faults: detects worker failures and restarts Limited control over data and execution flow All algorithms must expressed in m, r, c, p You dont know: Where mappers and reducers run When a mapper or reducer begins or finishes Which input a particular mapper is processing Which intermediate key a particular reducer is processing
  • 4. combine combine combine combine b a 1 2 c 9 a c 5 2 b c 7 8 partition partition partition partition map map map map k1 k2 k3 k4 k5 k6 v1 v2 v3 v4 v5 v6 b a 1 2 c c 3 6 a c 5 2 b c 7 8 Shuffle and Sort: aggregate values by keys reduce reduce reduce a 1 5 b 2 7 c 2 9 8 r1 s1 r2 s2 r3 s3
  • 5. Tools for Synchronization Cleverly-constructed data structures Bring partial results together Sort order of intermediate keys Control order in which reducers process keys Partitioner Control which reducer processes which keys Preserving state in mappers and reducers Capture dependencies across multiple keys and values
  • 6. Preserving State Mapper object configure map close state one object per task Reducer object configure reduce close state one call per input key-value pair one call per intermediate key API initialization hook API cleanup hook
  • 7. Scalable Hadoop Algorithms: Themes Avoid object creation Inherently costly operation Garbage collection Avoid buffering Limited heap size Works for small datasets, but wont scale!
  • 8. Importance of Local Aggregation Ideal scaling characteristics: Twice the data, twice the running time Twice the resources, half the running time Why cant we achieve this? Synchronization requires communication Communication kills performance Thus avoid communication! Reduce intermediate data via local aggregation Combiners can help
  • 9. Shuffle and Sort Mapper Reducer other mappers other reducers circular buffer (in memory) spills (on disk) merged spills (on disk) intermediate files (on disk) Combiner Combiner
  • 10. Word Count: Baseline Whats the impact of combiners?
  • 11. Word Count: Version 1 Are combiners still needed?
  • 12. Word Count: Version 2 Are combiners still needed?
  • 13. Design Pattern for Local Aggregation In-mapper combining Fold the functionality of the combiner into the mapper by preserving state across multiple map calls Advantages Speed Why is this faster than actual combiners? Disadvantages Explicit memory management required Potential for order-dependent bugs
  • 14. Combiner Design Combiners and reducers share same method signature Sometimes, reducers can serve as combiners Often, not Remember: combiner are optional optimizations Should not affect algorithm correctness May be run 0, 1, or multiple times Example: find average of all integers associated with the same key
  • 15. Computing the Mean: Version 1 Why cant we use reducer as combiner?
  • 16. Computing the Mean: Version 2 Why doesnt this work?
  • 17. Computing the Mean: Version 3 Fixed?
  • 18. Computing the Mean: Version 4 Are combiners still needed? What if the S & C are too large?
  • 19. Algorithm Design: Running Example Term co-occurrence matrix for a text collection M = N x N matrix (N = vocabulary size) Mij: number of times i and j co-occur in some context (for concreteness, lets say context = sentence) Why? Distributional profiles as a way of measuring semantic distance Semantic distance useful for many language processing tasks
  • 20. MapReduce: Large Counting Problems Term co-occurrence matrix for a text collection = specific instance of a large counting problem A large event space (number of terms) A large number of observations (the collection itself) Goal: keep track of interesting statistics about the events Basic approach Mappers generate partial counts Reducers aggregate partial counts How do we aggregate partial counts efficiently?
  • 21. First Try: Pairs Each mapper takes a sentence: Generate all co-occurring term pairs For all pairs, emit (a, b) count Reducers sum up counts associated with these pairs Use combiners!
  • 23. Pairs Analysis Advantages Easy to implement, easy to understand Disadvantages Lots of pairs to sort and shuffle around (upper bound?) Not many opportunities for combiners to work
  • 24. Another Try: Stripes Idea: group together pairs into an associative array Each mapper takes a sentence: Generate all co-occurring term pairs For each term, emit a { b: countb, c: countc, d: countd } Reducers perform element-wise sum of associative arrays (a, b) 1 (a, c) 2 (a, d) 5 (a, e) 3 (a, f) 2 a { b: 1, c: 2, d: 5, e: 3, f: 2 } a { b: 1, d: 5, e: 3 } a { b: 1, c: 2, d: 2, f: 2 } a { b: 2, c: 2, d: 7, e: 3, f: 2 } +
  • 26. Stripes Analysis Advantages Far less sorting and shuffling of key-value pairs Can make better use of combiners Disadvantages More difficult to implement Underlying object more heavyweight Fundamental limitation in terms of size of event space
  • 27. Cluster size: 38 cores Data Source: Associated Press Worldstream (APW) of the English Gigaword Corpus (v3), which contains 2.27 million documents (1.8 GB compressed, 5.7 GB uncompressed)
  • 28. Questions Can you combine Stripes approach with in- mapper combiner? What if the stripes are too large?
  • 29. Relative Frequencies How do we estimate relative frequencies from counts? Why do we want to do this? How do we do this with MapReduce? ' ) ' , ( count ) , ( count ) ( count ) , ( count ) | ( B B A B A A B A A B f
  • 30. f(B|A): Stripes Easy! One pass to compute (a, *) Another pass to directly compute f(B|A) a {b1:3, b2 :12, b3 :7, b4 :1, }
  • 31. f(B|A): Pairs For this to work: Must emit extra (a, *) for every bn in mapper Must make sure all as get sent to same reducer (use partitioner) Must make sure (a, *) comes first (define sort order) Must hold state in reducer across different key-value pairs (a, b1) 3 (a, b2) 12 (a, b3) 7 (a, b4) 1 (a, *) 32 (a, b1) 3 / 32 (a, b2) 12 / 32 (a, b3) 7 / 32 (a, b4) 1 / 32 Reducer holds this value in memory
  • 32. Order Inversion Common design pattern Computing relative frequencies requires marginal counts But marginal cannot be computed until you see all counts Buffering is a bad idea! Trick: getting the marginal counts to arrive at the reducer before the joint counts Optimizations Apply in-memory combining pattern to accumulate marginal counts Should we apply combiners?
  • 33. Synchronization: Pairs vs. Stripes Approach 1: turn synchronization into an ordering problem Sort keys into correct order of computation Partition key space so that each reducer gets the appropriate set of partial results Hold state in reducer across multiple key-value pairs to perform computation Illustrated by the pairs approach Approach 2: construct data structures that bring partial results together Each reducer receives all the data it needs to complete the computation Illustrated by the stripes approach
  • 34. Recap: Tools for Synchronization Cleverly-constructed data structures Bring data together Sort order of intermediate keys Control order in which reducers process keys Partitioner Control which reducer processes which keys Preserving state in mappers and reducers Capture dependencies across multiple keys and values
  • 35. Issues and Tradeoffs Number of key-value pairs Object creation overhead Time for sorting and shuffling pairs across the network Size of each key-value pair De/serialization overhead Local aggregation Opportunities to perform local aggregation varies Combiners make a big difference Combiners vs. in-mapper combining RAM vs. disk vs. network