More Related Content
Similar to Dr. Stickle (20)
More from Bastian Greshake (19)
Recently uploaded (20)
Dr. Stickle
- 3. The Goal
- 4. The Goal Creating a pipeline for EST-Analysis
- 5. The Goal Creating a pipeline for EST-Analysis Displaying the results via an online framework
- 6. wtf is a pipeline?
- 7. Different steps of analysis performed in an automated fashion wtf is a pipeline?
- 8. wtf is a pipeline? Different steps of analysis performed in an automated fashion
- 9. Analysis:
- 10. Assembly of EST-Reads into contigs SNP-Detection MIRA But: Takes ages not well documented buggy
- 11. Assembly of EST-Reads into contigs SNP-Detection MIRA But: Takes ages not well documented buggy
- 12. Assembly of EST-Reads into contigs SNP-Detection MIRA But: Takes ages not well documented buggy
- 13. MIRA Assembly of EST-Reads into contigs SNP-Detection But: Takes ages not well documented buggy
- 14. MIRA Assembly of EST-Reads into contigs SNP-Detection But: Takes ages not well documented buggy
- 15. MIRA Assembly of EST-Reads into contigs SNP-Detection But: Takes ages not well documented buggy
- 16. MIRA Assembly of EST-Reads into contigs SNP-Detection But: Takes ages not well documented buggy
- 17. SNPs ORFs Contigs BLAST MIRA PFAM BLAST2GO
- 18. MIRA SNPs ORFs Contigs BLAST PFAM BLAST2GO
- 19. MIRA Contigs SNPs ORFs BLAST PFAM BLAST2GO
- 20. MIRA Contigs SNPs ORFs BLAST PFAM BLAST2GO
- 21. MIRA Contigs SNPs ORFs BLAST PFAM BLAST2GO
- 22. MIRA Contigs SNPs ORFs BLAST PFAM BLAST2GO
- 23. MIRA Contigs SNPs ORFs BLAST PFAM BLAST2GO
- 24. BLAST Basic Local Alignment Search Tool
- 25. BLAST Basic Local Alignment Search Tool
- 26. BLAST Basic Local Alignment Search Tool Standard for searching sequences against a database
- 27. BLAST Basic Local Alignment Search Tool Standard for searching sequences against a database emphasizes speed over sensitivity
- 28. BLAST Basic Local Alignment Search Tool Standard for searching sequences against a database emphasizes speed over sensitivity
- 29. BLAST Basic Local Alignment Search Tool Standard for searching sequences against a database emphasizes speed over sensitivity
- 30. BLAST Basic Local Alignment Search Tool Standard for searching sequences against a database emphasizes speed over sensitivity
- 31. Tools gene ontology Blast2GO mapping open reading frame ORF prediction PFAM domain annotation
- 32. Blast2GO
- 33. Tools gene ontology Blast2GO mapping open reading frame ORF prediction PFAM domain annotation
- 34. ORF
- 35. Tools gene ontology Blast2GO mapping open reading frame ORF prediction PFAM domain annotation
- 36. PFAM
- 38. Ugly *.ace-output generated via MIRA
- 39. What weve got here:
- 40. What weve got here: Different tools many different output-files
- 41. What weve got here: Different tools many different output-files What we want: a structured database containing all the information
- 42. How to parse Class 束Parser損 Function BLAST-Parser Function PFAM-Parser Function FASTA-Parser ... Data Script read input use parser insert db
- 43. How to parse Class 束Parser損 Function BLAST-Parser Function PFAM-Parser Function FASTA-Parser ... Data Script read input use parser insert db
- 44. How to parse Class 束Parser損 Function BLAST-Parser Function PFAM-Parser Function FASTA-Parser ... Data Script read input use parser insert db
- 45. How to parse Class 束Parser損 Function BLAST-Parser Function PFAM-Parser Function FASTA-Parser ... Data Script read input use parser insert db
- 46. How to parse Data Class 束Parser損 Function BLAST-Parser Function PFAM-Parser Function FASTA-Parser ... Script read input use parser insert db Database
- 52. Summary & Results created the pipeline analysed data started filling the database
- 53. Summary & Results created the pipeline analysed data started filling the database To be done wait for MIRA SNP-parser
- 54. thx to: Marvin, for 束time till scooter損 and sending us to Lothar Lothar, for providing always friendly and calm advice Suse, for actually having used MIRA at least once Andrew, for Andreas Andreas, for Andrew Bastien Chevreux, for not fixing those damn bugs in MIRA
- 55. k,thx,bai
- 56. Dr. Iglo
- 57. Dr. Iglo