ELIXIR
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ELIXIR aims to create a sustainable European infrastructure for biological information, supporting life sciences and its applications in various sectors. The strategy focuses on connecting national bioinformatics centers and EMBL-EBI to provide coordinated services through a distributed infrastructure. In 2023, well-connected nodes will enable users to access and derive knowledge from extensive life science datasets.
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ELIXIR
ELIXIRRafael C. Jimenez
油
This document provides an overview of the European Life Sciences Infrastructure for Biological Information (ELIXIR). ELIXIR aims to build a sustainable infrastructure for biological data by coordinating existing life science resources across Europe. It will provide services for data, tools, computing, standards, and training. ELIXIR is establishing pilot projects to test integration of these services and address challenges like data access and scale. A Technical Coordination Group leads implementation and coordinates task forces to develop each area of the infrastructure. ELIXIR also partners with e-infrastructures to utilize high-performance computing and networking resources. Its goal is to support life science research and translation to areas like medicine, the environment, and bioindustry.Elixir at de.nbi meeting
Elixir at de.nbi meetingNiklas Blomberg
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- Data transfer
- Compute access
- Training
Data Hub:
- Secure data sharing
- Data management
- Metadata catalogues
AAI:
- Single sign-on
- User attributes
- Group management
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resourcesThe European life-science data infrastructure: Data, Computing and Services ...
The European life-science data infrastructure: Data, Computing and Services ...Rafael C. Jimenez
油
The document provides an update on the European Life Sciences Infrastructure for Biological Information (ELIXIR). ELIXIR aims to establish a distributed infrastructure to handle the growing volume of life science data. It coordinates several national nodes that provide bioinformatics resources and services. Key recent activities include establishing legal agreements with member states, developing a technical coordinator network, and running pilot projects to test solutions and foster collaboration between nodes. Moving forward, priorities include further establishing the infrastructure and community, providing visible and useful services to users, and ensuring sustainable data management.ELIXIR FAIR Activities - Examplars
ELIXIR FAIR Activities - ExamplarsSusanna-Assunta Sansone
油
ELIXIR is a European infrastructure that brings together life science resources from across Europe. It offers databases, tools, computing capabilities, and training opportunities. ELIXIR nodes provide these services and connect national data infrastructures. ELIXIR communities connect infrastructure experts to drive service developments. ELIXIR is funded through a mixed model including public sources. It works to sustain important biological data resources and make data FAIR through recommended standards and interoperability resources. ELIXIR also aims to develop a sustainable tools ecosystem and provides training through its portal.ELIXIR
ELIXIRRafael C. Jimenez
油
ELIXIR aims to establish a pan-European infrastructure for biological information to support life sciences research. It will do this by coordinating nodes that provide services and resources, establishing standards, and closing skills gaps. Key challenges include sustaining data and services, ensuring interoperability, and dealing with increasingly large datasets. ELIXIR is working on pilots and task forces to address issues like cloud computing, storage, authentication and authorization.ELIXIR
ELIXIRRafael C. Jimenez
油
ELIXIR is a European research infrastructure for biological information that aims to facilitate life sciences research across Europe. It brings together life science resources from member countries to build a robust infrastructure for biological data. Individual organizations or countries cannot achieve this alone. ELIXIR establishes national nodes that leverage local strengths and priorities to deliver shared services through a distributed network. This allows the infrastructure to scale effectively with increasing data challenges. ELIXIR also works to improve data integration and interoperability across distributed resources through activities like developing standards and linking related communities.Growing ELIXIR-UK
Growing ELIXIR-UKjmhancock
油
This document outlines the agenda and goals for a meeting to discuss expanding the UK node of ELIXIR, the European infrastructure for biological information. The meeting will include introductions, a presentation on the criteria for new resources to join ELIXIR-UK, an open discussion, and breakout groups. The expansion aims to have ELIXIR-UK better represent the breadth of UK bioinformatics infrastructure. New members would benefit from influence and recognition, while needing to provide sustainable resources, participate in activities, and work towards interoperability. Expressions of interest will be evaluated based on criteria like alignment with ELIXIR themes, impact, and long-term sustainability. Outcomes may include becoming an official ELICurrent and future plans for ELIXIR presentation given by Niklas Blomberg, EL...
Current and future plans for ELIXIR presentation given by Niklas Blomberg, EL...ELIXIR
油
Elixir aims to establish a sustainable European infrastructure for biological information to support life science research and its applications in medicine, environment, and industry. It focuses on building local bioinformatics capacity, offering services, and ensuring the interoperability of data within life sciences. Future challenges include scaling infrastructure, securing funding, and enhancing access to data and services for users across Europe.ELIXIR-UK
ELIXIR-UKELIXIR UK
油
ELIXIR is a European infrastructure that connects national centers and EMBL-EBI to enhance biological research data management and accessibility across academia and industry. With a focus on sustainability, it supports life science researchers by providing quality-controlled data and services, ensuring long-term resource management and fostering collaboration among its nodes. The ELIXIR-UK node oversees national interests, contributes to international consortia, and engages in activities pertaining to training, interoperability, and data tools.ELIXIR
ELIXIRRafael C. Jimenez
油
ELIXIR is a European research infrastructure for biological information that aims to support life science research. It brings together major bioinformatics providers and is supported by 17 EU member states. ELIXIR works to safeguard biological data and build sustainable data services. It establishes a distributed infrastructure to handle the large growth of data and provides tools, services, and platforms to facilitate access and analysis of data. ELIXIR also develops standards and provides training to support computational biology. Key activities include establishing national nodes, technical task forces, and pilot projects in areas like cloud resources, data transfer, and linking distributed databases.ELIXIR UK Node presentation to the ELIXIR Board
ELIXIR UK Node presentation to the ELIXIR BoardCarole Goble
油
The document provides information about ELIXIR-UK, which is the UK node of ELIXIR, a European infrastructure for biological information. ELIXIR-UK is a network of 18 UK organizations and has established training programs, services, and communities. It coordinates UK participation in ELIXIR and related EU projects. ELIXIR-UK also works to establish interoperability across biological data resources and help make these resources FAIR (Findable, Accessible, Interoperable, Reusable). It is working to establish BioFAIR, a proposed new institute that would coordinate UK life science data infrastructure.eROSA Stakeholder WS1: Ensembl, ELIXIR and engineering interconnections
eROSA Stakeholder WS1: Ensembl, ELIXIR and engineering interconnectionse-ROSA
油
EMBL-EBI provides biological data services and is home to many data resources including Ensembl, Gene Ontology, Protein Data Bank, and others. It handles large volumes of data and users. Ensembl is a suite of software for genome analysis and visualization that was originally for vertebrates but now includes other taxa. ELIXIR coordinates biological data resources across Europe to enable access and ensure data is FAIR. There are challenges in agreeing standards, funding, and divisions of labor across many countries and domains.ELIXIR
ELIXIRRafael C. Jimenez
油
The document discusses ELIXIR, the European Life Sciences Infrastructure for Biological Information. It provides information on ELIXIR's governance structure, member countries, and nodes. The nodes work with the central ELIXIR hub to develop and deliver bioinformatics services, resources, training, and more. The goal is to support life science research through integrated, interoperable data and tools.Coordinating European training and ELIXIR UK by Rita Hendricusdottir
Coordinating European training and ELIXIR UK by Rita HendricusdottirELIXIR UK
油
The document outlines the objectives and initiatives of ELIXIR UK, which aims to build a sustainable European infrastructure for biological information that supports life science research. It emphasizes the establishment of a coherent training community across ELIXIR member states to enhance bioinformatics training for research scientists and technologists. Key activities include identifying training gaps, developing new training materials, and integrating e-learning platforms to improve accessibility to training resources.BiPday 2014 -- Pesole Graziano
BiPday 2014 -- Pesole Grazianoeventi-ITBbari
油
The document discusses ELIXIR, the European infrastructure for biological information. ELIXIR aims to build a sustainable infrastructure to support life science research and its translation to various sectors. It coordinates existing bioinformatics services across Europe. The Italian node of ELIXIR (ELIXIR-ITA) coordinates domestic bioinformatics resources and connects them to the broader ELIXIR network. It works to aggregate and integrate Italy's small but excellent bioinformatics community and supports the large amount of data being generated through high-throughput sequencing platforms in Italy.Summary of Technical Coordinators discussions
Summary of Technical Coordinators discussionsRafael C. Jimenez
油
The document summarizes discussions from the Technical Coordinator Group (TCG) meeting. The TCG is an advisory body to the Heads of Nodes Committee and consists of technical experts from each ELIXIR Node. They discuss technical and scientific aspects of ELIXIR and identify best practices. The summary outlines the members of TCG, describes short term working groups led by technical coordinators on specific technical efforts, and provides updates on various ELIXIR task forces focusing on areas such as cloud, storage, authentication and authorization, service registry, and training.ELIXIR and data grand challenges in life sciences
ELIXIR and data grand challenges in life sciencesRafael C. Jimenez
油
This document discusses challenges in life sciences data management and services provided by ELIXIR to address these challenges. ELIXIR aims to facilitate life sciences research by building a sustainable infrastructure for biological data in Europe. It coordinates several nodes across member states that provide specialized data services. ELIXIR is also running pilot projects to test integration of services, including providing cloud access to reference data and distributed authentication and access to clinical archives. Future challenges include sustaining funding and scaling to handle exponentially growing data volumes.Technical activities in ELIXIR Europe
Technical activities in ELIXIR EuropeRafael C. Jimenez
油
ELIXIR is a European research infrastructure that aims to facilitate life sciences research by coordinating the development of sustainable bioinformatics services and tools across Europe. It is working on several pilot projects to improve data integration, access to cloud computing resources, and authentication and authorization processes for sensitive data. The document discusses ELIXIR's goals and various technical work streams and task forces focused on developing strategies and standards to address challenges in integrating distributed biological data resources.ELIXIR Node poster Netherlands 2014
ELIXIR Node poster Netherlands 2014ELIXIR
油
The Dutch node of ELIXIR (ELIXIR-NL) is hosted by the Dutch Techcenter for Life Sciences (DTL) and incorporates Dutch bioinformatics strengths from previous initiatives. It acts as a gateway for ELIXIR capabilities and expertise for DTL partners. ELIXIR-NL focuses on three core areas: data interoperability, compute and storage infrastructure services, and training. It collaborates closely with other Dutch life science infrastructure projects and organizations.ELIXIR Node poster EMBL EBI
ELIXIR Node poster EMBL EBI ELIXIR
油
EMBL-EBI plays a pivotal role in ELIXIR by providing bioinformatics resources that span molecular biology from sequences to full systems. EMBL-EBI is collaborating with other European organizations on various ELIXIR Pilot Actions to integrate data resources, enable seamless data transfer across borders, and support life science research at large scales. The pilot actions demonstrate how ELIXIR can expand Europe's bioinformatics capabilities to meet future demands.Update to the ELIXIR Board Nov 2014
Update to the ELIXIR Board Nov 2014ELIXIR UK
油
The document discusses the establishment and activities of the ELIXIR UK node, facilitating training in bioinformatics and related fields across several UK centers and industry partnerships. It emphasizes the importance of training scientists and technologists through initiatives like 'train the trainers', workshops, and collaboration with other ELIXIR nodes. The aim is to address skills gaps and promote data interoperability while enhancing training quality and impact through strategic focus areas and funding opportunities.ELIXIR Competence Centre in EOSC-hub
ELIXIR Competence Centre in EOSC-hubEOSC-hub project
油
This document summarizes ELIXIR's plans to develop a cloud computing platform to support life science research across Europe. It discusses ELIXIR's goals to integrate user authentication, rationalize reference data distribution, support hybrid cloud/HPC deployments, develop a task distribution network using Kubernetes, and support workflow engines. Key components include Biocontainers for tools, RDSDS for reference data, TESK for task execution, and WES-ELIXIR for workflows. The platform aims to be compatible with GA4GH standards and support projects like EOSC-Hub and EOSC-Life.ELIXIR and ELIXIR-UK training activities
ELIXIR and ELIXIR-UK training activitiesELIXIR UK
油
The document outlines Elixir's training activities and infrastructure, aimed at creating a unified training community across Europe for bioinformatics and related fields. It details the various training initiatives and coordinated efforts among member countries, including specific training programs, workshops, and the development of an e-learning strategy. The initiative targets different audiences, including developers, trainers, and researchers to enhance bioinformatics skills and collaboration among national nodes.Update on the ELIXIR UK node by Chris Ponting
Update on the ELIXIR UK node by Chris PontingELIXIR UK
油
The document outlines the current activities and future plans of the ELIXIR UK node, focusing on building a robust European life sciences infrastructure for biological information. It emphasizes training initiatives for researchers and technologists in bioinformatics and related fields, detailing collaborations across various UK institutions and industry engagement. Key aspects include the establishment of a training community, addressing training needs, and coordinating efforts to enhance the delivery and effectiveness of bioinformatics training across Europe.Globus in European Life Science
Globus in European Life ScienceGlobus
油
EMBL-EBI provides essential biological data services and bioinformatics support, serving the scientific community with a mission to facilitate free access to data resources. The document outlines their data infrastructure, which handles about 2 petabytes of data monthly and supports numerous job slots across various computational platforms. Future initiatives include enhancing data transfer systems and integrating with the European Open Science Cloud.Bioinformatics and sequencing tools used in research and development - OECD B...
Bioinformatics and sequencing tools used in research and development - OECD B...OECD Environment
油
The de.nbi network is a comprehensive bioinformatics infrastructure in Germany, providing services and training for life sciences research, and facilitating collaboration among academia, industry, and international organizations. It features eight service centers focused on various bioinformatics disciplines and has established a cloud computing environment to support data analysis. Additionally, de.nbi collaborates with the European ELIXIR network to enhance data-sharing and research capabilities across Europe.Big Data
Big DataSURFnet
油
This document discusses the challenges of interdisciplinarity and managing large amounts of biological data. It notes that while challenges seem easy from the perspective of one's own discipline, knowledge from other disciplines is needed. It then lists the names and affiliations of members of the "Dutch Team" working on issues related to biological data integration and management.ELIXIR TCG update
ELIXIR TCG updateRafael C. Jimenez
油
The European Life Sciences Infrastructure for Biological Information (ELIXIR) coordinates biological data resources across Europe. It has several task forces working on key issues. This document summarizes discussions from the Technical Coordinators Group (TCG) meeting and provides updates from 7 task forces: Cloud, Storage, Authentication and Authorization (AAI), Service Registry, Metrics and Monitoring, Communication, and Website. Each section briefly describes the task force's goals, current work, and plans to coordinate with other groups to develop technical strategies for ELIXIR.EOSC FAIR Data Session - EOSC Stakeholders Forum 2018
EOSC FAIR Data Session - EOSC Stakeholders Forum 2018EOSCpilot .eu
油
This document summarizes a presentation on implementing the FAIR data principles. It begins with an introduction to the FAIR principles of findable, accessible, interoperable and reusable data. It then discusses how each of the principles can be achieved, such as through assigning persistent identifiers, providing rich metadata, and using standard vocabularies. The remainder of the document lists the agenda for a panel discussion on implementing FAIR data, which will address questions around university involvement, data reuse, alignment with trusted data repositories, disciplinary vs unified implementation, and training.FAIR Assessment for Repositories and Researchers
FAIR Assessment for Repositories and Researchers EOSCpilot .eu
油
DANS is an institute focused on data archiving and networked services, providing tools for assessing the 'fairness' of research data through various self-assessment tools and checklists. These tools aim to help researchers and repositories evaluate data findability, accessibility, interoperability, and reusability. A specific checklist for researchers is also available to guide them in ensuring their data meets fair principles before deposition.More Related Content
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ELIXIR is a European infrastructure that connects national centers and EMBL-EBI to enhance biological research data management and accessibility across academia and industry. With a focus on sustainability, it supports life science researchers by providing quality-controlled data and services, ensuring long-term resource management and fostering collaboration among its nodes. The ELIXIR-UK node oversees national interests, contributes to international consortia, and engages in activities pertaining to training, interoperability, and data tools.ELIXIR
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EMBL-EBI provides biological data services and is home to many data resources including Ensembl, Gene Ontology, Protein Data Bank, and others. It handles large volumes of data and users. Ensembl is a suite of software for genome analysis and visualization that was originally for vertebrates but now includes other taxa. ELIXIR coordinates biological data resources across Europe to enable access and ensure data is FAIR. There are challenges in agreeing standards, funding, and divisions of labor across many countries and domains.ELIXIR
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The document discusses ELIXIR, the European Life Sciences Infrastructure for Biological Information. It provides information on ELIXIR's governance structure, member countries, and nodes. The nodes work with the central ELIXIR hub to develop and deliver bioinformatics services, resources, training, and more. The goal is to support life science research through integrated, interoperable data and tools.Coordinating European training and ELIXIR UK by Rita Hendricusdottir
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The document outlines the objectives and initiatives of ELIXIR UK, which aims to build a sustainable European infrastructure for biological information that supports life science research. It emphasizes the establishment of a coherent training community across ELIXIR member states to enhance bioinformatics training for research scientists and technologists. Key activities include identifying training gaps, developing new training materials, and integrating e-learning platforms to improve accessibility to training resources.BiPday 2014 -- Pesole Graziano
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The document discusses ELIXIR, the European infrastructure for biological information. ELIXIR aims to build a sustainable infrastructure to support life science research and its translation to various sectors. It coordinates existing bioinformatics services across Europe. The Italian node of ELIXIR (ELIXIR-ITA) coordinates domestic bioinformatics resources and connects them to the broader ELIXIR network. It works to aggregate and integrate Italy's small but excellent bioinformatics community and supports the large amount of data being generated through high-throughput sequencing platforms in Italy.Summary of Technical Coordinators discussions
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The document summarizes discussions from the Technical Coordinator Group (TCG) meeting. The TCG is an advisory body to the Heads of Nodes Committee and consists of technical experts from each ELIXIR Node. They discuss technical and scientific aspects of ELIXIR and identify best practices. The summary outlines the members of TCG, describes short term working groups led by technical coordinators on specific technical efforts, and provides updates on various ELIXIR task forces focusing on areas such as cloud, storage, authentication and authorization, service registry, and training.ELIXIR and data grand challenges in life sciences
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This document discusses challenges in life sciences data management and services provided by ELIXIR to address these challenges. ELIXIR aims to facilitate life sciences research by building a sustainable infrastructure for biological data in Europe. It coordinates several nodes across member states that provide specialized data services. ELIXIR is also running pilot projects to test integration of services, including providing cloud access to reference data and distributed authentication and access to clinical archives. Future challenges include sustaining funding and scaling to handle exponentially growing data volumes.Technical activities in ELIXIR Europe
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ELIXIR is a European research infrastructure that aims to facilitate life sciences research by coordinating the development of sustainable bioinformatics services and tools across Europe. It is working on several pilot projects to improve data integration, access to cloud computing resources, and authentication and authorization processes for sensitive data. The document discusses ELIXIR's goals and various technical work streams and task forces focused on developing strategies and standards to address challenges in integrating distributed biological data resources.ELIXIR Node poster Netherlands 2014
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The Dutch node of ELIXIR (ELIXIR-NL) is hosted by the Dutch Techcenter for Life Sciences (DTL) and incorporates Dutch bioinformatics strengths from previous initiatives. It acts as a gateway for ELIXIR capabilities and expertise for DTL partners. ELIXIR-NL focuses on three core areas: data interoperability, compute and storage infrastructure services, and training. It collaborates closely with other Dutch life science infrastructure projects and organizations.ELIXIR Node poster EMBL EBI
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The document discusses the establishment and activities of the ELIXIR UK node, facilitating training in bioinformatics and related fields across several UK centers and industry partnerships. It emphasizes the importance of training scientists and technologists through initiatives like 'train the trainers', workshops, and collaboration with other ELIXIR nodes. The aim is to address skills gaps and promote data interoperability while enhancing training quality and impact through strategic focus areas and funding opportunities.ELIXIR Competence Centre in EOSC-hub
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The document outlines the European Open Science Cloud (EOSC) for research, funded by the European Commission, with a focus on enabling interoperability among data infrastructures. It mentions key presentations and discussions on the necessary steps for enhancing interoperability and connecting various scientific communities within the EOSC framework. Key stakeholders are identified, and the document emphasizes the importance of facilitating fair access and collaboration in research.EOSC Stakeholders Forum: For a FAIR Europe-What's Needed, What's Existing
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The document discusses the European Open Science Cloud (EOSC) pilot project, emphasizing its role in exposing FAIR (Findable, Accessible, Interoperable, Reusable) data rather than creating it. Funded by the European Commission, it outlines guidelines, recommendations, and services to enhance data interoperability and provide access to useful metadata catalogs. The importance of operational metadata and existing standards is highlighted to facilitate data findability and accessibility in the research ecosystem.EOSC Stakeholders Forum: Enabling Interoperability-Experience from EOSCpilot
EOSC Stakeholders Forum: Enabling Interoperability-Experience from EOSCpilotEOSCpilot .eu
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The EOSCpilot project, funded by the European Commission, aims to enhance interoperability in the European Open Science Cloud (EOSC) by engaging stakeholders, developing demonstrators, and establishing a governance framework. Key challenges include scientific, technical, and cultural aspects of creating an open data science environment, as well as addressing risks related to authentication, trust, and common vocabulary. The project focuses on multi-infrastructure pilots to ensure accessibility and reusability of scientific data through collaboration and the implementation of FAIR principles.Science Demonstrator Session: Physics and Astrophysics
Science Demonstrator Session: Physics and AstrophysicsEOSCpilot .eu
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The document discusses the European Open Science Cloud (EOSC) pilot project aimed at improving computational resources for research in various scientific disciplines, including physics, hydrology, and astrophysics. It highlights the project's successes in enabling cross-cloud applications, data management, and reproducibility in research while also addressing challenges such as limited resources and data fairness. Several science demonstrators are presented, which show the integration of existing services and technologies, albeit with some unresolved issues, particularly in data accessibility and collaboration.Science Demonstrator Session: Social and Earth Sciences
Science Demonstrator Session: Social and Earth SciencesEOSCpilot .eu
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The document discusses the European Open Science Cloud (EOSC) pilot project, which focuses on various social and earth sciences initiatives, including creating a text mining tool for archaeological reports and a visual media service for cultural heritage research. It outlines successes, issues encountered, and lessons learned during implementation, highlighting the need for effective data interoperability and user support within the EOSC ecosystem. Future plans include integrating tools across multiple languages and enhancing data exchange protocols to facilitate better collaboration among researchers.Science Demonstrator Session: Life and Materials Sciences
Science Demonstrator Session: Life and Materials SciencesEOSCpilot .eu
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The European Open Science Cloud for Research project focuses on utilizing cloud-based resources to enhance life sciences research, particularly in cancer genomics, by analyzing large datasets and improving reproducibility of genomic data processing workflows. It highlights achievements in executing genomic pipelines, addressing issues related to resource availability and data handling, and the necessity for automated problem detection and resolution. Key lessons emphasize the importance of diverse tools for data management, the need for clearer standards in pipeline documentation, and ongoing support for open science practices among scientists.EOSC Architecture Session - EOSC Stakeholders Forum 2018
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The document discusses the outcomes of the EOSC architecture definition panel held during the 2nd EOSC Stakeholders Forum, focusing on the architecture required for an open science-oriented environment. It emphasizes the need for interconnected services, organizational structures, and the capturing of perspectives to support diverse research demands while enhancing accessibility and sustainability. The panel also identifies essential services that could attract more providers to the EOSC marketplace and discusses potential barriers and business models for service resellers.Building a European policy framework
Building a European policy frameworkEOSCpilot .eu
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The document outlines the objectives and structure of the EOSC Stakeholder Forum, focusing on shaping European Open Science Cloud policies. It discusses key concepts, stakeholder participation, macro and micro policies, and the existing policy landscape affecting open science in Europe. The document emphasizes the integration of various stakeholders, policy harmonization, and the importance of infrastructure and data flow in facilitating open science initiatives.EOSC Architecture: a System of Systems
EOSC Architecture: a System of SystemsEOSCpilot .eu
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The document outlines the European Open Science Cloud (EOSC) as a federated environment aimed at enhancing collaborative scientific practices through shared data and tools. It emphasizes an iterative implementation process, support for open science infrastructure, and the need for diverse service providers to ensure effective management and technical solutions. Additionally, it highlights the importance of governance, policies, and a coordinated approach to meet the requirements of various users in the scientific community.Ad
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