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FAIRsharing & FAIRcookbook at RDA 2023

Susanna-Assunta Sansone
Susanna-Assunta Sansone

The FAIRsharing journey in RDA document discusses: 1) FAIRsharing's growth and involvement with RDA since 2011, including its Working Group established in 2015 to curate standards, databases, and policies to promote FAIR data. 2) FAIRsharing's current activities and impact, such as its registry of over 4,000 records from many disciplines and usage in various tools and services. 3) Opportunities for further engagement with RDA, such as leveraging their expertise for contributions to the FAIR Cookbook, an open resource providing technical recipes for applying FAIR principles to life science data.

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The FAIRsharing journey in RDA Susanna-Assunta Sansone SciLifeLab workshop, Data-driven life science and the RDA, 24 March, 2023 - /SusannaSansone Academic Lead for Research Practice, Engineering Science, Professor of Data Readiness Oxford e-Research Centre, Associate Director Interoperability Platform, Co-Lead RDA Activities Focus Group, Steer. Com. RDA FAIRsharing WG, co-chair www.rd-alliance.org/group/fairsharing-registry-connecting-data-policies-standards-databases.html
CC BY 4.0 International An informative and educational resource, and a service FAIRsharing provides curated descriptions and relationship graphs of standards, databases and policies COMMUNITY STANDARDS POLICIES by funders, journals and other organizations DATABASES including repositories and knowledgebases Identifiers Terminologies Guidelines Formats
CC BY 4.0 International Promote the value and use of standards, databases and policies in all disciplines, by engaging stakeholders across all sectors, through all stages of the research life cycle FAIRsharing mission and how we deliver it Guide consumers to discover, select and use these resources with confidence Help producers to make their resources more visible, more widely adopted and cited Researchers Developers and curators Journal publishers Societies and Alliances Librarians and Trainers Funders
CC BY 4.0 International 2011 doi: 10.1126/science.1180598 2009 WG 2015 From BioSharing to FAIRsharing, maturing under the RDA Growth since launch as of March 2023 collections databases standards policies all records 2011-2015 2016 2017 2018 2019 2020 2021 2022 2023 WG 2017 2016
CC BY 4.0 International FAIRsharing in numbers: content, contributions, coverage as of March 2023 collections databases standards policies all records 2011-2015 2016 2017 2018 2019 2020 2021 2022 2023 Growth since launch Types and subtypes Disciplines
CC BY 4.0 International Users, adopters and collaborators include: https://fairsharing.org/communities An endorsed output of the FAIRsharing WG (since 2015): A WG (since 2015) in: A recommended resource in EOSC reports Users from all stakeholder groups Researchers Developers and curators Journal publishers Societies and Alliances Librarians and Trainers Funders Working with all stakeholders, all disciplines
CC BY 4.0 International Domain experts, from RDA, EOSC clusters and worldwide, who Help curate content, standards, repositories and policies relevant to their EOSC cluster, RDA group, research domain, or area of focus Contribute to educational material for the users Gain expertise, networking and attribution for their work, via ORCID Funded by the: Ambassadorship Programme blog.fairsharing.org/?p=261 and blog.fairsharing.org/?p=336 #FAIRsharingCommunityChampions Programme - from 2022 Curate Influence Gain Attribution Engage Learn fairsharing.org/community_champions
CC BY 4.0 International fairsharing.org/community_champions/our_champions #FAIRsharingCommunityChampions Programme
CC BY 4.0 International Infographics and factsheet by our Champions fairsharing.org/educational
CC BY 4.0 International Collections: showing organizations FAIR profiles Collection URL: fairsharing.org/graph/3515; each record has a DOI Collection URL: fairsharing.org/graph/3513; each record has a DOI The standards, repositories and policies each EOSC Cluster uses or endorses
CC BY 4.0 International A growing number of tools and services access FAIRsharing API, and use it for look-up, selection and content retrieval for standards and repositories in: creation of data management plans enrichment of guidance and training material assessment of FAIRness Content: powering 3rd party tools doi.org/10.5281/zenodo.7463421
CC BY 4.0 International Stakeholder Advisors Amye Kenall, Research Square Adam Leary, Oxford University Press Catriona MacCallum, Hindawi Dagmar Meyer, ERC, Executive Agency Dominic Fripp, JISC Emma Ganley, Protocols.io Geraldine Clement-Stoneham, MRC Helena Cousijn, DataCite Lauren Cadwallader, PLoS Imma Subirats, FAO of the United Nations Kiera McNiece, Cambridge University Press Luiz Olavo Bonino, GO-FAIR Lorenzo Feri, Elsevier Mark Leggott, Digital Research Alliance of Canada Marta Teperek, TUDelft Michael Ball, Medical Research Council Mike Huerta, NIH National Library of Medicine Rebecca Grant, F1000 Nick Everitt and Matthew Cannon, Taylor and Francis Sarah Callaghan, Strategy & Policy Unit, University of Oxford Sarah Stewart, Bodleian Libraries, University of Oxford Scott Edmunds, GigaScience, Oxford University Press Simon Hodson, CODATA Sowmya Swaminathan, Springer Nature Theo Bloom, British Medical Journal Thomas Lemberger, EMBO Press Wei-Mun Chan, eLife Executive Advisors David Carr, Independent expert Peter McQuilton, (FAIRsharing Founding Member), GSK Robert Hanisch, NIST Varsha Khodiyar, Independent Expert RDA FAIRsharing WG Chairs Graham Smith, Springer Nature Holly Murray, Health Data Research UK Peter McQuilton, GSK Rebecca Grant, F1000 Simon Hodson, CODATA Allyson Lister, University of Oxford Susanna-Assunta Sansone, University of Oxford Community Champions fairsharing.org/community_champions/our_champions Operational Team fairsharing.org/communities#governance @FAIRsharing_org contact@fairsharing.org @fairsharing@fediscience.org www.rd-alliance.org/group/fairsharing-registry-connecting-data-policies-standards-databases.html
Pharmas and academia join forces - A role for RDA? Philippe Rocca-Serra (co-lead) ELIXIR-UK, University of Oxford Vassilios Ioannidis (co-lead) ELIXIR-Swiss, Vital-IT Group, and SIB Wei Gu ELIXIR-LU, University of Luxembourg Tooba Abbassi-Daloii ELIXIR-NL, Maastricht University Salvador Capella-Gutierrez ELIXIR-Spain, BSC Susanna-Assunta Sansone ELIXIR-UK, University of Oxford Ishwar Chandramouliswaran NIH, O鍖ce of Data Science Strategy elixir-europe.org The FAIR Cookbook Editorial Board SciLifeLab workshop, Data-driven life science and the RDA, 24 March, 2023 - /SusannaSansone
Authored by almost 100 data professionals from industry and academia, led by ELIXIR Nodes, with participation of USA NIH faircookbook.elixir-europe.org Hands-on, technical step-by-step examples Write recipes, share your expertise, showcase your tools Recommend in policies, use in educational material Sustained in ELIXIR and adopted internationally! An open, live resource for the life science with recipes that cover the operation steps of FAIR data management
https://faircookbook.elixir-europe.org Editorial Board: faircookbook-ed@elixir-europe.org Pre-print: doi.org/10.5281/zenodo.715 6792 Article in press at: An open, live resource for the life science with recipes that cover the operation steps of FAIR data management
Content covers: omics pre-clinical clinical areas But not limited to it! Coverage and learning objectives Learn how to improve the FAIRness with exemplar datasets Understand the levels and indicators of FAIRness Discover open source technologies, tools and services Find out the required skills Acknowledge the challenges
Growing content https://faircookbook.elixir-europe.org/content/search-wizard.html
https://fairplus.github.io/Data-Maturity Maturity level and indicators Provide insights into FAIR Maturity reached by applying a speci鍖c recipe to improve a dataset
Focuses on addressing needs Goal: improving visibility of content, e.g.: Goal: semantic integration of datasets from multiple sources, e.g.: Goal: security compliance and with regulators, e.g.: https://w3id.org/faircookbook/FCB0 10 https://w3id.org/faircookbook/FCB00 7 https://w3id.org/faircookbook/FCB00 6 https://w3id.org/faircookbook/FCB02 0 https://w3id.org/faircookbook/FCB00 4 https://w3id.org/faircookbook/FCB01 4 https://w3id.org/faircookbook/FCB03 5
The FAIRi鍖cation framework in a recipe https://w3id.org/faircookbook/FCB079
Credit and citability: because all contributions matters! CreDiT attribution ontology https://w3id.org/faircookbook/FCB006
Motivations and ambitions beyond the hype Large body of generic FAIR guidance Motivations Non-speci鍖c guidance for the life sciences Ambitions Target speci鍖c situations to deliver a guide with applied examples Join academia and industry forces to make the case for FAIR data management Build capacity for high quality data management in the private and public sectors Lack of practical examples of how-to with di鍖erent data types and scenarios
A role for RDA? Leverage on the RDA community expertise and make a call for contributions? Many topics, and related recipes, are applicable across disciplines Address common challenges and 鍖nd common solutions at pre-competitive level (industry) How to manage relevance to Life Science (ELIXIR and pharmas), while expanding? Quality over quantity of the contributions: proof of FAIR competence (as individual and as an organisation)? Eg Involved in data centric projects as data managers Authored publication, datasets, reports, technical documentation (For industry) provided service as data curators, data vendors. Currently one Editorial Board, with a lot of work Consider multiple domain focused Boards? Just engage with RDA during pleaneries? Stay connected to its growing community and keep abreast with the latest activities Expand the network of potential users, adopters and do target invites for contributions

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FAIRsharing & FAIRcookbook at RDA 2023

  • 1. The FAIRsharing journey in RDA Susanna-Assunta Sansone SciLifeLab workshop, Data-driven life science and the RDA, 24 March, 2023 - /SusannaSansone Academic Lead for Research Practice, Engineering Science, Professor of Data Readiness Oxford e-Research Centre, Associate Director Interoperability Platform, Co-Lead RDA Activities Focus Group, Steer. Com. RDA FAIRsharing WG, co-chair www.rd-alliance.org/group/fairsharing-registry-connecting-data-policies-standards-databases.html
  • 2. CC BY 4.0 International An informative and educational resource, and a service FAIRsharing provides curated descriptions and relationship graphs of standards, databases and policies COMMUNITY STANDARDS POLICIES by funders, journals and other organizations DATABASES including repositories and knowledgebases Identifiers Terminologies Guidelines Formats
  • 3. CC BY 4.0 International Promote the value and use of standards, databases and policies in all disciplines, by engaging stakeholders across all sectors, through all stages of the research life cycle FAIRsharing mission and how we deliver it Guide consumers to discover, select and use these resources with confidence Help producers to make their resources more visible, more widely adopted and cited Researchers Developers and curators Journal publishers Societies and Alliances Librarians and Trainers Funders
  • 4. CC BY 4.0 International 2011 doi: 10.1126/science.1180598 2009 WG 2015 From BioSharing to FAIRsharing, maturing under the RDA Growth since launch as of March 2023 collections databases standards policies all records 2011-2015 2016 2017 2018 2019 2020 2021 2022 2023 WG 2017 2016
  • 5. CC BY 4.0 International FAIRsharing in numbers: content, contributions, coverage as of March 2023 collections databases standards policies all records 2011-2015 2016 2017 2018 2019 2020 2021 2022 2023 Growth since launch Types and subtypes Disciplines
  • 6. CC BY 4.0 International Users, adopters and collaborators include: https://fairsharing.org/communities An endorsed output of the FAIRsharing WG (since 2015): A WG (since 2015) in: A recommended resource in EOSC reports Users from all stakeholder groups Researchers Developers and curators Journal publishers Societies and Alliances Librarians and Trainers Funders Working with all stakeholders, all disciplines
  • 7. CC BY 4.0 International Domain experts, from RDA, EOSC clusters and worldwide, who Help curate content, standards, repositories and policies relevant to their EOSC cluster, RDA group, research domain, or area of focus Contribute to educational material for the users Gain expertise, networking and attribution for their work, via ORCID Funded by the: Ambassadorship Programme blog.fairsharing.org/?p=261 and blog.fairsharing.org/?p=336 #FAIRsharingCommunityChampions Programme - from 2022 Curate Influence Gain Attribution Engage Learn fairsharing.org/community_champions
  • 8. CC BY 4.0 International fairsharing.org/community_champions/our_champions #FAIRsharingCommunityChampions Programme
  • 9. CC BY 4.0 International Infographics and factsheet by our Champions fairsharing.org/educational
  • 10. CC BY 4.0 International Collections: showing organizations FAIR profiles Collection URL: fairsharing.org/graph/3515; each record has a DOI Collection URL: fairsharing.org/graph/3513; each record has a DOI The standards, repositories and policies each EOSC Cluster uses or endorses
  • 11. CC BY 4.0 International A growing number of tools and services access FAIRsharing API, and use it for look-up, selection and content retrieval for standards and repositories in: creation of data management plans enrichment of guidance and training material assessment of FAIRness Content: powering 3rd party tools doi.org/10.5281/zenodo.7463421
  • 12. CC BY 4.0 International Stakeholder Advisors Amye Kenall, Research Square Adam Leary, Oxford University Press Catriona MacCallum, Hindawi Dagmar Meyer, ERC, Executive Agency Dominic Fripp, JISC Emma Ganley, Protocols.io Geraldine Clement-Stoneham, MRC Helena Cousijn, DataCite Lauren Cadwallader, PLoS Imma Subirats, FAO of the United Nations Kiera McNiece, Cambridge University Press Luiz Olavo Bonino, GO-FAIR Lorenzo Feri, Elsevier Mark Leggott, Digital Research Alliance of Canada Marta Teperek, TUDelft Michael Ball, Medical Research Council Mike Huerta, NIH National Library of Medicine Rebecca Grant, F1000 Nick Everitt and Matthew Cannon, Taylor and Francis Sarah Callaghan, Strategy & Policy Unit, University of Oxford Sarah Stewart, Bodleian Libraries, University of Oxford Scott Edmunds, GigaScience, Oxford University Press Simon Hodson, CODATA Sowmya Swaminathan, Springer Nature Theo Bloom, British Medical Journal Thomas Lemberger, EMBO Press Wei-Mun Chan, eLife Executive Advisors David Carr, Independent expert Peter McQuilton, (FAIRsharing Founding Member), GSK Robert Hanisch, NIST Varsha Khodiyar, Independent Expert RDA FAIRsharing WG Chairs Graham Smith, Springer Nature Holly Murray, Health Data Research UK Peter McQuilton, GSK Rebecca Grant, F1000 Simon Hodson, CODATA Allyson Lister, University of Oxford Susanna-Assunta Sansone, University of Oxford Community Champions fairsharing.org/community_champions/our_champions Operational Team fairsharing.org/communities#governance @FAIRsharing_org contact@fairsharing.org @fairsharing@fediscience.org www.rd-alliance.org/group/fairsharing-registry-connecting-data-policies-standards-databases.html
  • 13. Pharmas and academia join forces - A role for RDA? Philippe Rocca-Serra (co-lead) ELIXIR-UK, University of Oxford Vassilios Ioannidis (co-lead) ELIXIR-Swiss, Vital-IT Group, and SIB Wei Gu ELIXIR-LU, University of Luxembourg Tooba Abbassi-Daloii ELIXIR-NL, Maastricht University Salvador Capella-Gutierrez ELIXIR-Spain, BSC Susanna-Assunta Sansone ELIXIR-UK, University of Oxford Ishwar Chandramouliswaran NIH, O鍖ce of Data Science Strategy elixir-europe.org The FAIR Cookbook Editorial Board SciLifeLab workshop, Data-driven life science and the RDA, 24 March, 2023 - /SusannaSansone
  • 14. Authored by almost 100 data professionals from industry and academia, led by ELIXIR Nodes, with participation of USA NIH faircookbook.elixir-europe.org Hands-on, technical step-by-step examples Write recipes, share your expertise, showcase your tools Recommend in policies, use in educational material Sustained in ELIXIR and adopted internationally! An open, live resource for the life science with recipes that cover the operation steps of FAIR data management
  • 15. https://faircookbook.elixir-europe.org Editorial Board: faircookbook-ed@elixir-europe.org Pre-print: doi.org/10.5281/zenodo.715 6792 Article in press at: An open, live resource for the life science with recipes that cover the operation steps of FAIR data management
  • 16. Content covers: omics pre-clinical clinical areas But not limited to it! Coverage and learning objectives Learn how to improve the FAIRness with exemplar datasets Understand the levels and indicators of FAIRness Discover open source technologies, tools and services Find out the required skills Acknowledge the challenges
  • 18. https://fairplus.github.io/Data-Maturity Maturity level and indicators Provide insights into FAIR Maturity reached by applying a speci鍖c recipe to improve a dataset
  • 19. Focuses on addressing needs Goal: improving visibility of content, e.g.: Goal: semantic integration of datasets from multiple sources, e.g.: Goal: security compliance and with regulators, e.g.: https://w3id.org/faircookbook/FCB0 10 https://w3id.org/faircookbook/FCB00 7 https://w3id.org/faircookbook/FCB00 6 https://w3id.org/faircookbook/FCB02 0 https://w3id.org/faircookbook/FCB00 4 https://w3id.org/faircookbook/FCB01 4 https://w3id.org/faircookbook/FCB03 5
  • 20. The FAIRi鍖cation framework in a recipe https://w3id.org/faircookbook/FCB079
  • 21. Credit and citability: because all contributions matters! CreDiT attribution ontology https://w3id.org/faircookbook/FCB006
  • 22. Motivations and ambitions beyond the hype Large body of generic FAIR guidance Motivations Non-speci鍖c guidance for the life sciences Ambitions Target speci鍖c situations to deliver a guide with applied examples Join academia and industry forces to make the case for FAIR data management Build capacity for high quality data management in the private and public sectors Lack of practical examples of how-to with di鍖erent data types and scenarios
  • 23. A role for RDA? Leverage on the RDA community expertise and make a call for contributions? Many topics, and related recipes, are applicable across disciplines Address common challenges and 鍖nd common solutions at pre-competitive level (industry) How to manage relevance to Life Science (ELIXIR and pharmas), while expanding? Quality over quantity of the contributions: proof of FAIR competence (as individual and as an organisation)? Eg Involved in data centric projects as data managers Authored publication, datasets, reports, technical documentation (For industry) provided service as data curators, data vendors. Currently one Editorial Board, with a lot of work Consider multiple domain focused Boards? Just engage with RDA during pleaneries? Stay connected to its growing community and keep abreast with the latest activities Expand the network of potential users, adopters and do target invites for contributions
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