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glycolysis and its phase and pathway regulations

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1) Glycolysis is a series of 10 enzyme-catalyzed reactions that converts glucose into pyruvate, generating ATP in the process. 2) The reactions are divided into two phases: the preparatory phase requires ATP investment to phosphorylate glucose, and the payoff phase generates a net production of ATP through substrate-level phosphorylation. 3) Overall, glycolysis partially oxidizes one glucose molecule to produce two pyruvate molecules, along with a net gain of two ATP per glucose molecule.

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PRESENTED BY: NOOPUR JOSHI (M.Sc. BIOTECHNOLOGY)
METABOLISM METABOLISM is a series of interconnected chemical reactions occurring within a cell and the chemical compounds involved in it are termed as METABOLITES. The enzymatic reactions are organized into discreet pathways which proceed in a stepwise manner, transforming substrates into end products through many specific chemical intermediates.
Metabolic pathways can be of following types: LINEAR (Eg. Glycolysis) CYCLIC (Eg. Citric acid cycle) SPIRAL ( Eg. Biosynthesis of Fatty Acids) Metabolic pathways serve 2 functions: Generation of energy to drive vital functions. Synthesis of biological molecules.
METABOLIC PATHWAYS CATABOLIC PATHWAYS Are involved in oxidative breakdown of larger complexes. They are usually exergonic in nature ANABOLIC PATHWAYS Are involved in the synthesis of compounds. They are usually endergonic in nature.
CHARACTERISTICS OF METABOLISM 1. Metabolic pathways are irreversible 2. Every metabolic pathway has a committed first step. 3. All metabolic pathways are regulated. 4. Metabolic pathways in eukaryotic cells occur in specific cellular locations.
GLYCOLYSIS Glycolysis comes from a merger of two Greek words: Glykys = sweet Lysis = breakdown/ splitting It is also known as Embden-Meyerhof-Parnas pathway or EMP pathway.
INTRODUCTION GLYCOLYSIS is the sequence of 10 enzyme-catalyzed reactions that converts glucose into pyruvate with simultaneous production on of ATP. In this oxidative process, 1mol of glucose is partially oxidised to 2 moles of pyruvate. This major pathway of glucose metabolism occurs in the cytosol of all cell. This unique pathway occurs aerobically as well as anaerobically & doesnt involve molecular oxygen.
It also includes formation of Lactate from Pyruvate. The glycolytic sequence of reactions differ from species to species only in the mechanism of its regulation & in the subsequent metabolic fate of the pyruvate formed. In aerobic organisms, glycolysis is the prelude to Citric acid cycle and ETC. Glycolysis is the central pathway for Glucose catabolism.
Glucose Extracellular matrix & cell wall polysachharide. Glycogen, Starch, Sucrose Pyruvate Ribose-5- phosphat e Oxidation via pentose phosphate pathway Synthesis of structural polymers storage Oxidation via glycolysis Major pathways of glucose utilization.
glycolysis and its phase and pathway regulations
TWO PHASES OF GLYCOLYSIS Glycolysis leads to breakdown of 6-C glucose into two molecules of 3-C pyruvate with the enzyme catalyzed reactions being bifurcated or categorized into 2 phases: 1. Phase 1- preparatory phase 2. Phase 2- payoff phase.
PREPARATORY PHASE It consists of the 1st 5 steps of glycolysis in which the glucose is enzymatically phosphorylated by ATP to yield Fructose-1,6-biphosphate. This fructuse-1,6-biphosphate is then split in half to yield 2 molecules of 3-carbon containing Glyceraldehyde-3-phosphate/ dihyroxyacteone phosphate.
Thus the first phase results in cleavage of the hexose chain. This cleavage requires an investment of 2 ATP molecules to activate the glucose mole and prepare it for its cleavage into 3-carbon compound.
glycolysis and its phase and pathway regulations
PAYOFF PHASE This phase constitutes the last 5 reactions of Glycolysis. This phase marks the release of ATP molecules during conversion of Glyceraldehyde-3-phosphtae to 2 moles of Pyruvate. Here 4 moles of ADP are phosphorylated to ATP. Although 4 moles of ATP are formed, the net result is only 2 moles of ATP per mole of Glucose oxidized, since 2 moles of ATP are utilized in Phase 1.
glycolysis and its phase and pathway regulations
STEPWISE EXPLAINATION OF GLYCOLYSIS
STEP 1: PHOSPHORYLATION Glucose is phosphorylated by ATP to form sugar phosphate. This is an irreversible reaction & is catalyzed by hexokinase. Thus the reaction can be represented as follows: Glucose Glucose-6-phosphate Hexokinase ATP ADP
STEP 2: ISOMERIZATION It is a reversible rearrangement of chemical structure of carbonyl oxygen from C1 to C2, forming a Ketose from the Aldose. Thus, isomerization of the aldose Glucose6-phosphate gives the ketose, Fructose-6-phoshphate. Glucose-6-phosphate Phosphoglucoisomerase Fructose-6-phosphate
STEP 3: PHOPHORYLATION Here the Fructose-6-phosphate is phosphorylated by ATP to fructose-1,6-bisphosphate. This is an irreversible reaction and is catalyzed by phosphofructokinase enzyme. Fructose-6-phosphate Fructose-1,6-bisphosphate ATP ADP Phosphofructokinase
STEP 4: BREAKDOWN This six carbon sugar is cleaved to produce two 3-C molecules: glyceradldehyde-3-phosphate (GAP) & dihydroxyacetone phosphate(DHAP). This reaction is catalyzed by Aldolase. Glyceraldehyde-3- phosphate Dihydroxyacetone phosphate Triose phosphate isomerase Fructose-1,6- bisphosphate Aldolase
STEP 5: ISOMERIZATION Dihydroxyacetone phosphate is oxidized to form Glyceraldehyde-3-phosphate. This reaction is catalyzed by triose phosphate isomerase enzyme. Glyceraldehyde-3-phosphate Dihydroxyacetone phosphate Triose phosphate isomerase 2 2
STEP 6 2 molecules of Glyceraldehyde-3-phosphate are oxidized. Glyceraldehyde-3-phosphate dehydrogenase catalyzes the conversion of Glyceraldehyde3- phosphate into 1,3-bisphosphoglycerate. Aldehyde Carboxylic acid Carboxylic acid Ortho- phosphate Acyl- phosphate product Joining)
Resultant reaction Glyceraldehyde-3-phosphate 1,3-bisphosphoglycerate Glyceraldehyde-3-phosphate dehydrogenase 2NAD + 2Pi 2NADH + 2H 2 2
STEP 7 The transfer of high-energy phosphate group that was generated earlier to ADP, form ATP. This phosphorylation i.e. addition of phosphate to ADP to give ATP is termed as substrate level phosphorylation as the phosphate donor is the substrate 1,3-bisphosphoglycerate (1,3-BPG). The product of this reaction is 2 molecules of 3-phosphoglycerate.
1,3-bisphosphoglycerate 3-phosphoglycerate Phosphoglycerate kinase 2 ADP 2 ATP FIRST SUBSTRATE LEVEL PHOSPHORYLATION 2 2
STEP 8 The remaining phosphate-ester linkage in 3- phosphoglycerate, is moved from carbon 3 to carbon 2 ,because of relatively low free energy of hydrolysis, to form 2-phosphoglycerate(2-PG). 3-phosphoglycerate 2-phosphoglycerate Phosphoglycerate mutase 2 2
STEP 9: DEHYDRATION OF 2-PG This is the second reaction in glycolysis where a high-energy phosphate compound is formed. The 2-phosphoglycerate is dehydrated by the action of enolase to phosphoenolpyruvate(PEP). This compound is the phosphate ester of the enol tautomer of pyruvate. This is a reversible reaction.
2-phosphoglycerate Phosphoenol pyruvate HO Enolase 2 2
STEP 10: TRANSFER OF PHOSPHATE FROM PEP to ADP This last step is the irreversible transfer of high energy phosphoryl group from phosphoenolpuruvate to ADP. This reaction is catalyzed by pyruvate kinase. This is the 2nd substrate level phosphorylation reaction in glycolysis which yields ATP. This is a non-oxidative phosphorylation reaction.
Phosphoenolpyruvate Pyruvate 2 2 Pyruvate kinase SECOND SUBSTRATE LEVEL PHOSPHORYLATION 2ADP 2ATP
OVERALL BALANCE SHEET OF GLYCOLYSIS Each molecule of glucose gives 2 molecules of Glyceraldehyde-3-phosphate. Therefore , the total input of all 10 reactions can be summarized as: Glucose + 2ATP+ 2Pi+ 2NAD+ 2H+ 4ADP 2Pyruvate+ 2H+ 4ATP+ 2HO+ 2NADH+ 2ADP On cancelling the common terms from the above equation, we get the net equation for Glycolysis:
Glucose+ 2Pi+ 2ADP+ 2NAD 2Pyruvate+ 2NADH+ 2ATP+ 2H + 2HO THUS THE SIMULTANEOUS REACTIONS INVOLVED IN GLYCOLYSIS ARE: Glucose is oxidized to Pyruvate NAD is reduced to NADH ADP is phosphorylated to ATP
ENERGY YIELD IN GLYCOLYSIS: STEP NO. REACTION CONSUMPTION of ATP GAIN of ATP 1 1 - 3 Glucose glucose-6-phosphate Fructose-6-phosphate fructose-1,6-biphosphate 1 - 7 - 1x2=2 10 1,3-diphosphoglycerate 3-phosphoglycerate Phosphoenolpyruvate pyruvate - 1x2=2 2 4 Net gain of ATP=4-2= 2
glycolysis and its phase and pathway regulations

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glycolysis and its phase and pathway regulations

  • 2. METABOLISM METABOLISM is a series of interconnected chemical reactions occurring within a cell and the chemical compounds involved in it are termed as METABOLITES. The enzymatic reactions are organized into discreet pathways which proceed in a stepwise manner, transforming substrates into end products through many specific chemical intermediates.
  • 3. Metabolic pathways can be of following types: LINEAR (Eg. Glycolysis) CYCLIC (Eg. Citric acid cycle) SPIRAL ( Eg. Biosynthesis of Fatty Acids) Metabolic pathways serve 2 functions: Generation of energy to drive vital functions. Synthesis of biological molecules.
  • 4. METABOLIC PATHWAYS CATABOLIC PATHWAYS Are involved in oxidative breakdown of larger complexes. They are usually exergonic in nature ANABOLIC PATHWAYS Are involved in the synthesis of compounds. They are usually endergonic in nature.
  • 5. CHARACTERISTICS OF METABOLISM 1. Metabolic pathways are irreversible 2. Every metabolic pathway has a committed first step. 3. All metabolic pathways are regulated. 4. Metabolic pathways in eukaryotic cells occur in specific cellular locations.
  • 6. GLYCOLYSIS Glycolysis comes from a merger of two Greek words: Glykys = sweet Lysis = breakdown/ splitting It is also known as Embden-Meyerhof-Parnas pathway or EMP pathway.
  • 7. INTRODUCTION GLYCOLYSIS is the sequence of 10 enzyme-catalyzed reactions that converts glucose into pyruvate with simultaneous production on of ATP. In this oxidative process, 1mol of glucose is partially oxidised to 2 moles of pyruvate. This major pathway of glucose metabolism occurs in the cytosol of all cell. This unique pathway occurs aerobically as well as anaerobically & doesnt involve molecular oxygen.
  • 8. It also includes formation of Lactate from Pyruvate. The glycolytic sequence of reactions differ from species to species only in the mechanism of its regulation & in the subsequent metabolic fate of the pyruvate formed. In aerobic organisms, glycolysis is the prelude to Citric acid cycle and ETC. Glycolysis is the central pathway for Glucose catabolism.
  • 9. Glucose Extracellular matrix & cell wall polysachharide. Glycogen, Starch, Sucrose Pyruvate Ribose-5- phosphat e Oxidation via pentose phosphate pathway Synthesis of structural polymers storage Oxidation via glycolysis Major pathways of glucose utilization.
  • 11. TWO PHASES OF GLYCOLYSIS Glycolysis leads to breakdown of 6-C glucose into two molecules of 3-C pyruvate with the enzyme catalyzed reactions being bifurcated or categorized into 2 phases: 1. Phase 1- preparatory phase 2. Phase 2- payoff phase.
  • 12. PREPARATORY PHASE It consists of the 1st 5 steps of glycolysis in which the glucose is enzymatically phosphorylated by ATP to yield Fructose-1,6-biphosphate. This fructuse-1,6-biphosphate is then split in half to yield 2 molecules of 3-carbon containing Glyceraldehyde-3-phosphate/ dihyroxyacteone phosphate.
  • 13. Thus the first phase results in cleavage of the hexose chain. This cleavage requires an investment of 2 ATP molecules to activate the glucose mole and prepare it for its cleavage into 3-carbon compound.
  • 15. PAYOFF PHASE This phase constitutes the last 5 reactions of Glycolysis. This phase marks the release of ATP molecules during conversion of Glyceraldehyde-3-phosphtae to 2 moles of Pyruvate. Here 4 moles of ADP are phosphorylated to ATP. Although 4 moles of ATP are formed, the net result is only 2 moles of ATP per mole of Glucose oxidized, since 2 moles of ATP are utilized in Phase 1.
  • 18. STEP 1: PHOSPHORYLATION Glucose is phosphorylated by ATP to form sugar phosphate. This is an irreversible reaction & is catalyzed by hexokinase. Thus the reaction can be represented as follows: Glucose Glucose-6-phosphate Hexokinase ATP ADP
  • 19. STEP 2: ISOMERIZATION It is a reversible rearrangement of chemical structure of carbonyl oxygen from C1 to C2, forming a Ketose from the Aldose. Thus, isomerization of the aldose Glucose6-phosphate gives the ketose, Fructose-6-phoshphate. Glucose-6-phosphate Phosphoglucoisomerase Fructose-6-phosphate
  • 20. STEP 3: PHOPHORYLATION Here the Fructose-6-phosphate is phosphorylated by ATP to fructose-1,6-bisphosphate. This is an irreversible reaction and is catalyzed by phosphofructokinase enzyme. Fructose-6-phosphate Fructose-1,6-bisphosphate ATP ADP Phosphofructokinase
  • 21. STEP 4: BREAKDOWN This six carbon sugar is cleaved to produce two 3-C molecules: glyceradldehyde-3-phosphate (GAP) & dihydroxyacetone phosphate(DHAP). This reaction is catalyzed by Aldolase. Glyceraldehyde-3- phosphate Dihydroxyacetone phosphate Triose phosphate isomerase Fructose-1,6- bisphosphate Aldolase
  • 22. STEP 5: ISOMERIZATION Dihydroxyacetone phosphate is oxidized to form Glyceraldehyde-3-phosphate. This reaction is catalyzed by triose phosphate isomerase enzyme. Glyceraldehyde-3-phosphate Dihydroxyacetone phosphate Triose phosphate isomerase 2 2
  • 23. STEP 6 2 molecules of Glyceraldehyde-3-phosphate are oxidized. Glyceraldehyde-3-phosphate dehydrogenase catalyzes the conversion of Glyceraldehyde3- phosphate into 1,3-bisphosphoglycerate. Aldehyde Carboxylic acid Carboxylic acid Ortho- phosphate Acyl- phosphate product Joining)
  • 25. STEP 7 The transfer of high-energy phosphate group that was generated earlier to ADP, form ATP. This phosphorylation i.e. addition of phosphate to ADP to give ATP is termed as substrate level phosphorylation as the phosphate donor is the substrate 1,3-bisphosphoglycerate (1,3-BPG). The product of this reaction is 2 molecules of 3-phosphoglycerate.
  • 26. 1,3-bisphosphoglycerate 3-phosphoglycerate Phosphoglycerate kinase 2 ADP 2 ATP FIRST SUBSTRATE LEVEL PHOSPHORYLATION 2 2
  • 27. STEP 8 The remaining phosphate-ester linkage in 3- phosphoglycerate, is moved from carbon 3 to carbon 2 ,because of relatively low free energy of hydrolysis, to form 2-phosphoglycerate(2-PG). 3-phosphoglycerate 2-phosphoglycerate Phosphoglycerate mutase 2 2
  • 28. STEP 9: DEHYDRATION OF 2-PG This is the second reaction in glycolysis where a high-energy phosphate compound is formed. The 2-phosphoglycerate is dehydrated by the action of enolase to phosphoenolpyruvate(PEP). This compound is the phosphate ester of the enol tautomer of pyruvate. This is a reversible reaction.
  • 30. STEP 10: TRANSFER OF PHOSPHATE FROM PEP to ADP This last step is the irreversible transfer of high energy phosphoryl group from phosphoenolpuruvate to ADP. This reaction is catalyzed by pyruvate kinase. This is the 2nd substrate level phosphorylation reaction in glycolysis which yields ATP. This is a non-oxidative phosphorylation reaction.
  • 32. OVERALL BALANCE SHEET OF GLYCOLYSIS Each molecule of glucose gives 2 molecules of Glyceraldehyde-3-phosphate. Therefore , the total input of all 10 reactions can be summarized as: Glucose + 2ATP+ 2Pi+ 2NAD+ 2H+ 4ADP 2Pyruvate+ 2H+ 4ATP+ 2HO+ 2NADH+ 2ADP On cancelling the common terms from the above equation, we get the net equation for Glycolysis:
  • 33. Glucose+ 2Pi+ 2ADP+ 2NAD 2Pyruvate+ 2NADH+ 2ATP+ 2H + 2HO THUS THE SIMULTANEOUS REACTIONS INVOLVED IN GLYCOLYSIS ARE: Glucose is oxidized to Pyruvate NAD is reduced to NADH ADP is phosphorylated to ATP
  • 34. ENERGY YIELD IN GLYCOLYSIS: STEP NO. REACTION CONSUMPTION of ATP GAIN of ATP 1 1 - 3 Glucose glucose-6-phosphate Fructose-6-phosphate fructose-1,6-biphosphate 1 - 7 - 1x2=2 10 1,3-diphosphoglycerate 3-phosphoglycerate Phosphoenolpyruvate pyruvate - 1x2=2 2 4 Net gain of ATP=4-2= 2