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Sterilization 
Fig. 1.1: Simple laboratory 
autoclave(moist heat) 
Temp. 121属C (due to double atmospheric pressure) 
Time : required: 20 min. 
Used for: surgical inst ,gauze,cotton,&culture media that 
are destroyed by heat. 
It is an efficient method of sterilization due to penetration 
power of steam &high temp. 
How to test efficacy of autoclave? 
By 1. chemical method :by cultivation of bacillus 
sterothermophilus( that can survive up to 120 c and beyond that it 
die) then it is cultivated to test efficacy. 
2. biological method :by chemical indicator on a tape that changes 
its colour into black or dark purple if the autoclave is efficient.
Fig. 1.2: Hot air oven(dry heat). 
Temp. 160属C Time required: 1 hour 
Used for: metal & glass  ware 
equipment &powder and oil.
With discs have varying 
diameter & varying pore size 
 Suitable for large volume of 
fluid. 
 and any biological fluids 
contain proteins that would 
coagulate if sterilized by 
autoclave as serum, vaccines 
and media used for cultivation 
of viruses
N.B. 
Bacterial loop : ( enoculating needle ) 
Sterilized by red heat 
PLASTIC SYRINGE: 
By ethylene oxide gas or gamma rays.
Fig. 2.1: Blood agar opaque red in color 
Type: 
Enriched & indicator medium 
Differentiate bet bact. By their hemolytic 
action on red cells (complete , partial, no 
hemolysis) .it is not sterilized by autoclave 
The sterile blood is added to sterile agar at 
temp. of 55 and poured in sterile plates 
Fig. 2.2: Blood agar showing: 
-Alpha heaemolysis (partial & greenish) 
-Beta haemolysis (complete ) 
Media
Fig. 2.3: MacConkeys medium 
Reddish transparent medium 
Fig. 2.4: MacConkeys medium showing: 
-Lactose fermenter  rose pink colonies 
-Non Lactose fermenter  pale yellow colonies 
Type: indicator (differential media) 
indicator: neutral red 
sugar content : lactose 
Use: to differ. Between lactose , non lactose frementers and for isolation of enteric 
media 
Sterilized by autoclave
Suitable for: growth of Nesisseria 
meningitides &haemophilus 
sterilize by : autoclave 
type: enriched media 
Sterilize by: heating in inspissator (oven) at 
80c for 2h for 3 successive days to kill 
bacterial spores
Fig. 2.8: TCBS media 
-Green, Transparent medium 
- It is used for isolation of Vibrio cholera 
Growh after 6-8 weeks 
Type: selective media 
inhibitory substance by: malachite green that inhibit all bacterial flora exept 
mycobacterium tuberculosis. 
Sterilize by: heating in inspissator (oven) at 80c for2 hours for 3 successive days
Used for: cultivation of anerobic 
bact. 
Suitable for growth of clostridia & 
other anaerobes. 
sterilize by : autoclave 
Used for: cultivation of anaerobic bact. 
Indicator: methylene blue
Bacterial Identification 
Fig. 3.1: Gram-positive bacilli 
(violet in colour) 
Fig. 3.2: Gram  negative bacilli 
(Red in colour)
Fig. 3.8: Catalase test 
-Positive test shows 
gas production 
-Give positive: with 
staphylococci 
Fig. 3.11: Oxidase test 
Positive test gives deep 
purple color 
Give positive: with 
Neisseria , vibrio 
&pseudomonas 
Fig. 3.10: Urease test 
Positve test gives Pink color 
Give positive: with proteus 
Indicator: phenol red
Fig. 3.14: Antibiotic sensitivity test 
Use: To choose the most effective drug used for ttt. 
Type: Disc diffusion method 
The drug show the largest zone of inhibition is the most effective 
惠悴  悋悋惠忰悋 惘  悋惠惘 惆悋悄 愕惠悽惆 惺悋悴 
SENSITIVE 
(LARGEST ZONE 
OF INHIBITION) 
Non 
sensitive 
(resistant)
Fig. 1.1: Staph. 
Aureus on blood 
agar it produce Beta 
haemolysis 
Fig. 1.2: Staph 
aureus on nutrient 
agar it produce 
golden yellow 
endopigment 
Staphylococci 
Systemic bacteriology 
Or bunches or gape like
Fig. 1.6: Coagulase test Staph. 
Aureus gives positive coagulase 
test 
Fig. 1.5: Catalase test 
all Staphylococci are 
catalase positive
strepcoocci 
Fig. 2.2: Growth of 
Strept viridians on 
blood agar showing 
partial or alpha 
heaemolysis 
Fig. 2.1: Growth of 
Strept pyogenes on 
blood agar showing 
complete or Beta 
haemolysis 
Fig. 2.3: Strept. In 
culture gram stain. 
(Gram positve cocci 
arranged in chain)
Fig. 2.8: Optochin 
sensitivity test 
strept. Pneum is 
sensitive 
strept. Viridance is 
resistant 
Fig. 2.9: Bacitracin 
sensitivty test 
strept. Pyogens is 
sensitive 
strept. Agalactiae is 
resistant 
Fig. 2.4: Sterpt. In 
pus Gram positive 
cocci
pneumococci 
Fig. 2.7:Pneumococci 
, Quelling reaction 
(capsule swelling with 
specific anti-sera) 
Fig. 2.6: Pneumococci 
in tissue, gram stain 
gram positive capsulated 
diplococci
Blood culture 
Added to 50  100 ml fluid medium 
5  10 ml blood 
Use of Blood culture 
for diagnosis of acute bacterial endocarditis 
Disease diagnosed by bl. Culture:subacute bacterial endocarditis 
(streptococcus viridans)  sanguis, salivarius + post streptococcal 
disease , brucellosis ,typhoid fever and puerperal sepsis.
3. Toxin-Antitoxin Neutralization Test 
Antistreptolysin test O (ASO) 
Use: 
1. For diagnosis of rheumatic 
fever 
2. detection of post 
streptococcal infection. 
3. Acute glomerulonephiritis 
Type of test: 
Neutralization (in vitro) 
The presence of antitoxin in 
sera neutralizes the hemolytic 
effect of toxin on addition of 
red blood cells. 
Diagnostic test: >200 todd 
unit 
1/25 1/50 1/100 1/200 1/400 1/800 control 
Titer 1/400 
Fig. 2. 11: Antistreptolysin O Titer 
(ASO)
Neisseria menngitides 
Fig. 3.2: Neisseria in 
cluture Gram negative 
cocci 
Fig. 3.3: Pathogenic 
neisseria in pus, gram 
stain. (Intra & 
exteracellular Gram 
negative diplococci) 
Fig. 3.4: Oxidase test 
All neisseria is oxidase positive
Neisseria gonorrhea 
 The media used for cultivation is Thayer 
martin media which is chocolate blood agar + 
antibiotics (vancomycin for gm positve 
bacteria +nystatin for fungi +cholesyin for gm 
negative bacteria ) 
 Antibiotics are put because it is separated 
from vagina or urethera.
CORYNEBACTERIUM GROUP 
Fig. 4.3: Coryn. 
Diphtheria in culture 
methylen blue stain 
Fig. 4.4: Coryn. Diphtheria 
(Gram positive bacilli 
have Chinese letter 
arrangement) 
Media: lofflers serum agar. 
Stain: gram & methylene blue 
Test: Eleks test
Type of reaction: precipitation test (Ag- Ab reaction) 
use: Detection of toxiogenic strain of C . Diphtheriae 
it is a double immunodiffusion test 
diffusion of the organism toxin with the antitoxin forming precipitation 
band or line 
Positive test 
Fig. 4.6: Eleks test 
Test strain 
Precipitation band 
Negative test 
Artiserum 
in the strip.
Mycobacterium 
Fig. 5.3: Myc. TB in Sputum, 
Z.N stain 
(few thin pink bacilli with blue 
background) 
Fig. 5.1: Selective 
media 
for Myc. T.B. 
Fig. 5.2: Culture of Myc. 
TB on L.J. media 
- Grow after 6-8 week
Fig. 5.5: Tuberculin test 
It involves intradermal injection of Purified Protein 
Derivative (PPD) 
type of test: Delayed type hypersenstivity used for Diagnosis of T.B. 
Type of reaction: antigen-anibody reaction 
+ve: give area of induration about 9 mm Time: 48  72 hours after injection 
Media: lowensten jensen media stain: ziehl neelsen stain
Protaus 
Fig. 8.4: Proteus culture 
on Nut. Agar (swarming 
growth) 
Fig. 8.5: Proteus in 
culture, gram stain 
(gram negative bacilli 
proteus showing 
pleomorphism ) 
Fig. 8.6: Urease 
test (proteus is 
urease test passivit
+ve -ve 
Fig. 8.9: Oxidase test 
(pseudomonas & Vibrio 
are ) oxidase psoitve 
Fig. 8.8: 
Pseudomonas 
culture on Nut. 
Agar (produce 
greenish blue 
exopigment 
Fig. 8.7: 
Pseudomonas in 
culture, gram stain 
(gram negative bacilli) 
Pseudomanas
Spore forming gram-positive bacilli(Bacillus & 
clostridium group) 
Fig. 9.4 Gram stained film of 
clost. Tetani in culture - 
Gram-positive long bacillus 
with terminal plugging spore 
(dram-stick) appearance 
Fig. 9.6 Robertsons cooked-meat broth 
medium glutathione is released after 
boiling (reducing agent)
Fig. 11.2 Fontana 
stained film showing 
commensally 
spirochetes 
Type of stain: 
Special stain 
Spirochaetes 
Fig. 11.3 Dark ground 
illumination microscopy 
of Treponema pallidum. 
悋惆惘悋 悋悋 惠慍 
Fig. 11.4:Indirect 
Immunofluorescence for 
spirochetes. It is called 
indirect as we put antibody 
then we put antiantibody 
with fluorescent die. To 
identify treponema pallidum
Reading of the results: 
- No hemolysis means a 
positive reaction 
i.e the complement is bound 
to the antigen-antibody 
complex. 
- Hemolysis means a 
negative reaction 
Fig. C-2: Complement fixation test 
wasserman test 
wasserman test
MYCOLOGY 
Fig. 12.3 Germ tube test 
for pathogenic strain of 
C. albicans 
Fig. 12.1 Grams 
stained films of 
Candida albicans 
Fig. 12.2 Candida 
albicans culture on 
sabourauds dextrose 
agar 
Mention type of test to identify the candida organism : Germ tube 
Mention 2 type for commensals of candida: vagina & alimentary tract & 
mouth
VIROLOGY 
Fig. 1.4: CPE (cytopathic effect of Herpes virus) 
Showing: Enlarged, aggregated and ballooned 
cells causing multi- nucleated giant cells 
Cell culture for vesicular lesion : herpes giant 
cell virus
immunology 
E. Immunofluorecence 
Fig. E-1: Direct immunofluorecence 
for detection of specific antigen 
Direct immunofluorecence 
- A specific antibody 
labeled with a 
fluorescent molecule 
(fluorescein or 
rhodamine) is added to 
the unknown antigen in 
the specimen. 
- It is used to detect 
the presence of an 
antigen on a cell or 
tissue.
F. Enzyme Linked Immunosorbent Assay (ELISA) 
-It is used for detection of antigen, antibodies. 
-ELISA is based on the measurement of an 
enzymatic reaction associated with immune 
complexes as detected by color development. 
Fig. F-1: Plate of ELISA test
Immunologic reactions 
1. Antistreptolysin o titer 
2. Eleks test 
3. Direct immunoflourescence test 
4. Elisa plate test 
5. Tuberculin skin test

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Practical micro

  • 1. Sterilization Fig. 1.1: Simple laboratory autoclave(moist heat) Temp. 121属C (due to double atmospheric pressure) Time : required: 20 min. Used for: surgical inst ,gauze,cotton,&culture media that are destroyed by heat. It is an efficient method of sterilization due to penetration power of steam &high temp. How to test efficacy of autoclave? By 1. chemical method :by cultivation of bacillus sterothermophilus( that can survive up to 120 c and beyond that it die) then it is cultivated to test efficacy. 2. biological method :by chemical indicator on a tape that changes its colour into black or dark purple if the autoclave is efficient.
  • 2. Fig. 1.2: Hot air oven(dry heat). Temp. 160属C Time required: 1 hour Used for: metal & glass ware equipment &powder and oil.
  • 3. With discs have varying diameter & varying pore size Suitable for large volume of fluid. and any biological fluids contain proteins that would coagulate if sterilized by autoclave as serum, vaccines and media used for cultivation of viruses
  • 4. N.B. Bacterial loop : ( enoculating needle ) Sterilized by red heat PLASTIC SYRINGE: By ethylene oxide gas or gamma rays.
  • 5. Fig. 2.1: Blood agar opaque red in color Type: Enriched & indicator medium Differentiate bet bact. By their hemolytic action on red cells (complete , partial, no hemolysis) .it is not sterilized by autoclave The sterile blood is added to sterile agar at temp. of 55 and poured in sterile plates Fig. 2.2: Blood agar showing: -Alpha heaemolysis (partial & greenish) -Beta haemolysis (complete ) Media
  • 6. Fig. 2.3: MacConkeys medium Reddish transparent medium Fig. 2.4: MacConkeys medium showing: -Lactose fermenter rose pink colonies -Non Lactose fermenter pale yellow colonies Type: indicator (differential media) indicator: neutral red sugar content : lactose Use: to differ. Between lactose , non lactose frementers and for isolation of enteric media Sterilized by autoclave
  • 7. Suitable for: growth of Nesisseria meningitides &haemophilus sterilize by : autoclave type: enriched media Sterilize by: heating in inspissator (oven) at 80c for 2h for 3 successive days to kill bacterial spores
  • 8. Fig. 2.8: TCBS media -Green, Transparent medium - It is used for isolation of Vibrio cholera Growh after 6-8 weeks Type: selective media inhibitory substance by: malachite green that inhibit all bacterial flora exept mycobacterium tuberculosis. Sterilize by: heating in inspissator (oven) at 80c for2 hours for 3 successive days
  • 9. Used for: cultivation of anerobic bact. Suitable for growth of clostridia & other anaerobes. sterilize by : autoclave Used for: cultivation of anaerobic bact. Indicator: methylene blue
  • 10. Bacterial Identification Fig. 3.1: Gram-positive bacilli (violet in colour) Fig. 3.2: Gram negative bacilli (Red in colour)
  • 11. Fig. 3.8: Catalase test -Positive test shows gas production -Give positive: with staphylococci Fig. 3.11: Oxidase test Positive test gives deep purple color Give positive: with Neisseria , vibrio &pseudomonas Fig. 3.10: Urease test Positve test gives Pink color Give positive: with proteus Indicator: phenol red
  • 12. Fig. 3.14: Antibiotic sensitivity test Use: To choose the most effective drug used for ttt. Type: Disc diffusion method The drug show the largest zone of inhibition is the most effective 惠悴 悋悋惠忰悋 惘 悋惠惘 惆悋悄 愕惠悽惆 惺悋悴 SENSITIVE (LARGEST ZONE OF INHIBITION) Non sensitive (resistant)
  • 13. Fig. 1.1: Staph. Aureus on blood agar it produce Beta haemolysis Fig. 1.2: Staph aureus on nutrient agar it produce golden yellow endopigment Staphylococci Systemic bacteriology Or bunches or gape like
  • 14. Fig. 1.6: Coagulase test Staph. Aureus gives positive coagulase test Fig. 1.5: Catalase test all Staphylococci are catalase positive
  • 15. strepcoocci Fig. 2.2: Growth of Strept viridians on blood agar showing partial or alpha heaemolysis Fig. 2.1: Growth of Strept pyogenes on blood agar showing complete or Beta haemolysis Fig. 2.3: Strept. In culture gram stain. (Gram positve cocci arranged in chain)
  • 16. Fig. 2.8: Optochin sensitivity test strept. Pneum is sensitive strept. Viridance is resistant Fig. 2.9: Bacitracin sensitivty test strept. Pyogens is sensitive strept. Agalactiae is resistant Fig. 2.4: Sterpt. In pus Gram positive cocci
  • 17. pneumococci Fig. 2.7:Pneumococci , Quelling reaction (capsule swelling with specific anti-sera) Fig. 2.6: Pneumococci in tissue, gram stain gram positive capsulated diplococci
  • 18. Blood culture Added to 50 100 ml fluid medium 5 10 ml blood Use of Blood culture for diagnosis of acute bacterial endocarditis Disease diagnosed by bl. Culture:subacute bacterial endocarditis (streptococcus viridans) sanguis, salivarius + post streptococcal disease , brucellosis ,typhoid fever and puerperal sepsis.
  • 19. 3. Toxin-Antitoxin Neutralization Test Antistreptolysin test O (ASO) Use: 1. For diagnosis of rheumatic fever 2. detection of post streptococcal infection. 3. Acute glomerulonephiritis Type of test: Neutralization (in vitro) The presence of antitoxin in sera neutralizes the hemolytic effect of toxin on addition of red blood cells. Diagnostic test: >200 todd unit 1/25 1/50 1/100 1/200 1/400 1/800 control Titer 1/400 Fig. 2. 11: Antistreptolysin O Titer (ASO)
  • 20. Neisseria menngitides Fig. 3.2: Neisseria in cluture Gram negative cocci Fig. 3.3: Pathogenic neisseria in pus, gram stain. (Intra & exteracellular Gram negative diplococci) Fig. 3.4: Oxidase test All neisseria is oxidase positive
  • 21. Neisseria gonorrhea The media used for cultivation is Thayer martin media which is chocolate blood agar + antibiotics (vancomycin for gm positve bacteria +nystatin for fungi +cholesyin for gm negative bacteria ) Antibiotics are put because it is separated from vagina or urethera.
  • 22. CORYNEBACTERIUM GROUP Fig. 4.3: Coryn. Diphtheria in culture methylen blue stain Fig. 4.4: Coryn. Diphtheria (Gram positive bacilli have Chinese letter arrangement) Media: lofflers serum agar. Stain: gram & methylene blue Test: Eleks test
  • 23. Type of reaction: precipitation test (Ag- Ab reaction) use: Detection of toxiogenic strain of C . Diphtheriae it is a double immunodiffusion test diffusion of the organism toxin with the antitoxin forming precipitation band or line Positive test Fig. 4.6: Eleks test Test strain Precipitation band Negative test Artiserum in the strip.
  • 24. Mycobacterium Fig. 5.3: Myc. TB in Sputum, Z.N stain (few thin pink bacilli with blue background) Fig. 5.1: Selective media for Myc. T.B. Fig. 5.2: Culture of Myc. TB on L.J. media - Grow after 6-8 week
  • 25. Fig. 5.5: Tuberculin test It involves intradermal injection of Purified Protein Derivative (PPD) type of test: Delayed type hypersenstivity used for Diagnosis of T.B. Type of reaction: antigen-anibody reaction +ve: give area of induration about 9 mm Time: 48 72 hours after injection Media: lowensten jensen media stain: ziehl neelsen stain
  • 26. Protaus Fig. 8.4: Proteus culture on Nut. Agar (swarming growth) Fig. 8.5: Proteus in culture, gram stain (gram negative bacilli proteus showing pleomorphism ) Fig. 8.6: Urease test (proteus is urease test passivit
  • 27. +ve -ve Fig. 8.9: Oxidase test (pseudomonas & Vibrio are ) oxidase psoitve Fig. 8.8: Pseudomonas culture on Nut. Agar (produce greenish blue exopigment Fig. 8.7: Pseudomonas in culture, gram stain (gram negative bacilli) Pseudomanas
  • 28. Spore forming gram-positive bacilli(Bacillus & clostridium group) Fig. 9.4 Gram stained film of clost. Tetani in culture - Gram-positive long bacillus with terminal plugging spore (dram-stick) appearance Fig. 9.6 Robertsons cooked-meat broth medium glutathione is released after boiling (reducing agent)
  • 29. Fig. 11.2 Fontana stained film showing commensally spirochetes Type of stain: Special stain Spirochaetes Fig. 11.3 Dark ground illumination microscopy of Treponema pallidum. 悋惆惘悋 悋悋 惠慍 Fig. 11.4:Indirect Immunofluorescence for spirochetes. It is called indirect as we put antibody then we put antiantibody with fluorescent die. To identify treponema pallidum
  • 30. Reading of the results: - No hemolysis means a positive reaction i.e the complement is bound to the antigen-antibody complex. - Hemolysis means a negative reaction Fig. C-2: Complement fixation test wasserman test wasserman test
  • 31. MYCOLOGY Fig. 12.3 Germ tube test for pathogenic strain of C. albicans Fig. 12.1 Grams stained films of Candida albicans Fig. 12.2 Candida albicans culture on sabourauds dextrose agar Mention type of test to identify the candida organism : Germ tube Mention 2 type for commensals of candida: vagina & alimentary tract & mouth
  • 32. VIROLOGY Fig. 1.4: CPE (cytopathic effect of Herpes virus) Showing: Enlarged, aggregated and ballooned cells causing multi- nucleated giant cells Cell culture for vesicular lesion : herpes giant cell virus
  • 33. immunology E. Immunofluorecence Fig. E-1: Direct immunofluorecence for detection of specific antigen Direct immunofluorecence - A specific antibody labeled with a fluorescent molecule (fluorescein or rhodamine) is added to the unknown antigen in the specimen. - It is used to detect the presence of an antigen on a cell or tissue.
  • 34. F. Enzyme Linked Immunosorbent Assay (ELISA) -It is used for detection of antigen, antibodies. -ELISA is based on the measurement of an enzymatic reaction associated with immune complexes as detected by color development. Fig. F-1: Plate of ELISA test
  • 35. Immunologic reactions 1. Antistreptolysin o titer 2. Eleks test 3. Direct immunoflourescence test 4. Elisa plate test 5. Tuberculin skin test