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Pt2 nanopore
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Alex Predeus
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Oxford Nanopore Stepik course - pt2
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Pt2 nanopore
1.
弌亠仄舒 仗仂仂从仂仍舒 Rapid
Sequencing 丐舒亞仄亠仆舒亳 亳亳于舒仆亳亠 舒亟舒仗亠仂于 亠从于亠仆亳仂于舒仆亳
2.
丼仂 仆亢仆仂 亟仍
亰舒仗从舒 Rapid?
3.
丼仂 仆亢仆仂 亟仍
亰舒仗从舒 Rapid?
4.
弌亠仄舒 仗仂仂从仂仍舒 1D
Genomic DNA by ligation
5.
弌亠仄舒 仗仂仂从仂仍舒 1D
Genomic DNA by ligation Covaris g-Tube 亳仍亳 仗亳
6.
弌亠仄舒 仗仂仂从仂仍舒 1D
Genomic DNA by ligation Covaris g-Tube 亳仍亳 仗亳 21G 20 舒亰 亳仍亳 26G 3-5 舒亰
7.
弌亠仄舒 仗仂仂从仂仍舒 1D
Genomic DNA by ligation (FFPE Repair Mix) End repair / dA-tailing module Blunt/TA Ligase Mix AMPure beads
8.
弌亠仄舒 仗仂仂从仂仍舒 1D
Genomic DNA by ligation (FFPE Repair Mix) End repair / dA-tailing module Blunt/TA Ligase Mix AMPure beads
9.
弌亠仄舒 仗仂仂从仂仍舒 1D
Genomic DNA by ligation
10.
亳从舒 弍亳弍仍亳仂亠从亳 SPRI bead
technology: Solid Phase Reversible Immobilization
11.
亳从舒 弍亳弍仍亳仂亠从亳
12.
仂仂从仂仍 1D^2 by
ligation
13.
弌亠仄舒 仗仂仂从仂仍舒 1D^2
by ligation
14.
弌亠仄舒 仗仂仂从仂仍舒 1D^2
by ligation
15.
舒从仂亟亳仂于舒仆亳亠 弍亳弍仍亳仂亠从 亳亞亳仂于舒仆亳亠
弍舒从仂亟仂于 Native barcoding kit 亟仍 1D
16.
舒从仂亟亳仂于舒仆亳亠 弍亳弍仍亳仂亠从 亳亞亳仂于舒仆亳亠
弍舒从仂亟仂于 Native barcoding kit 亟仍 1D 亳仂亠亟亳仆亠仆亳亠 舒仆仗仂亰仂仄仆仄 从仂仄仗仍亠从仂仄 Rapid Barcoding Sequencing Kit
17.
舒从仂亟亳仂于舒仆亳亠 弍亳弍仍亳仂亠从 亳亞亳仂于舒仆亳亠
弍舒从仂亟仂于 Native barcoding kit 亟仍 1D 亳仂亠亟亳仆亠仆亳亠 舒仆仗仂亰仂仄仆仄 从仂仄仗仍亠从仂仄 Rapid Barcoding Sequencing Kit 舒从仂亟 仆舒 丶-仗舒亶仄亠舒 PCR Barcoding Kit
18.
仂仄于舒仆亳亠 亠亶从亳 Flow Cell
Wash Kit 舒于仂 仂亟亠仍磳 弍亳弍仍亳仂亠从 仂 仄亠仄弍舒仆 舒于仂 仗仂仄于舒亠 亠亶从 亟仍 仆亠仄亠亟仍亠仆仆仂亞仂 亳仗仂仍亰仂于舒仆亳 舒于仂 S 仗仂仄于舒亠 亠亶从 亳 仗仂亰于仂仍磳 舒仆亳 亠亠
19.
弌亠仄舒 仗仂仂从仂仍舒 1D
Amplicon by ligation
20.
弌亠仄舒 仗仂仂从仂仍舒 1D
Amplicon by ligation
21.
仂仄于舒仆亳亠 亠亶从亳 Flow Cell
Wash Kit
22.
丐亠弍仂于舒仆亳 从 从舒亠于
磌亳仂舒 仗仂 Nanodrop: OD 260/280 于 仗亠亟亠仍舒 1,8 2,0 OD 260/230 仆亠 仆亳亢亠 2.0 亠亰 亟亠亠亞亠仆仂于 亳 亟亞亳 舒亰仄亠 舒亞仄亠仆仂于 >30kb 碻仂仂仆仂亠仆亳亠 从仂仆亠仆舒亳亶 仂亞仍舒仆仂 Qubit 亳 Nanodrop 亟仂仍亢仆仂 弍 仆亠 弍仂仍亠, 亠仄 1 : 1,5
23.
丐亠弍仂于舒仆亳 从 从舒亠于
丼亳仂舒 仗仂 Nanodrop: OD 260/280 于 仗亠亟亠仍舒 1,8 2,0 OD 260/230 仆亠 仆亳亢亠 2.0
24.
亟仂仍亢仆舒 弍
于仂从仂仄仂仍亠从仍仆仂亶 https://twitter.com/baptistemayjon1/status/818484473780203520 仍亳仆舒 仗仂亠仆亳 == 亟仍亳仆舒 舒亞仄亠仆舒
25.
弌从仂仍从仂 仆舒亟仂
亟仍 仗仂仂从仂仍仂于 弍亠亰 丶? Rapid 1D 1D^2 Direct cDNA Direct RNA 400 仆亞 1 - 2 仄从亞 1 - 2 仄从亞 250 仆亞 500 仆亞 仂亳亠仆仆仂亶 仂
26.
弌从仂仍从仂 仆舒亟仂
亟仍 仗仂仂从仂仍仂于 弍亠亰 丶?
27.
丼舒 3.亳仄亠仆亠仆亳 仆舒仆仂仗仂仆仂亞仂
亠从于亠仆亳仂于舒仆亳. 仆仂于仆亠 舒亟亳亳 亠从于亠仆亳仂于舒仆亳 仆舒 Oxford Nanopore 仂仍仆仂亞亠仆仂仄仆仂亠 亠从于亠仆亳仂于舒仆亳亠: 仂亠亟亳仆磺 亳 于仍舒于亶 弌亠从于亠仆亳仂于舒仆亳亠 舒仄仗仍亳从仂仆仂于: 16S, 18S, 亳 亟亞亳亠 弌亠从于亠仆亳仂于舒仆亳亠 从 亳 仗礆仂亠 亠从于亠仆亳仂于舒仆亳亠 亠仂亳亳舒仍仆亠 仗仂亟从舒亰从亳: 从舒从 仗仂于亳 于舒亳 舒仆 仆舒 仗亠?
28.
3.1. 仆仂于仆亠 舒亟亳亳
亠从于亠仆亳仂于舒仆亳 仆舒 Oxford Nanopore
29.
亟亠仍亠仆亳亠 弌 仗仂仄仂
从仂仍仂仆仂从 30 kb
30.
亟亠仍亠仆亳亠 弌 仗仂仄仂
从仂仍仂仆仂从 Genomic tips 50-100 kb30 kb
31.
亟亠仍亠仆亳亠 个亠仆仂仍-仍仂仂仂仄仆舒 从舒从亳 200-300
kb
32.
亟亠仍亠仆亳亠 弌 仗仂仄仂
亟亳舒仍亳亰舒 亟亠仍亠仆亳亠 于 舒亞舒仂亰亠 ~ 1000 kb150-250 kb
33.
仂亟亞仂仂于从舒 从 亠从于亠仆亳仂于舒仆亳
34.
MinKNOW: 亠仆 仗舒于仍亠仆亳
亠从于亠仆舒仂仂仄
35.
仂于亠从舒 仗亳弍仂舒
36.
弌亠从于亠仆亳仂于舒仆亳亠
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