The document discusses object-oriented programming concepts like encapsulation, inheritance and polymorphism as they relate to Raptor, an object-oriented proof assistant program. It identifies several areas for improvement, including reorganizing package structures, removing unnecessary classes, and reducing code duplication. It recommends using XML instead of serialization to store proofs, which would make the proofs more persistent, version resilient and fault tolerant. Implementing this would involve using XMLEncoder/Decoder and customizing the ProofBox class to follow JavaBeans specifications. The document also lists several anti-patterns found in Raptor's code like accidental complexity, magic numbers, and big ball of mud, and provides examples of each. It outlines fixes for specific bugs like