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Scientific computing in The Netherlands

Evert Lammerts
Evert Lammerts

This document discusses large-scale scientific computing in the Netherlands. It introduces SARA, the Dutch national high-performance computing center, which facilitates science in the Netherlands through large-scale computing, data storage, networking, visualization and other resources. SARA supports scientists through infrastructure maintenance, consulting, developing new services and tools, and tracking innovations. SARA works with scientists on projects and through resource requests to help solve large-scale computing problems.

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Large-Scale Scientific Computing in The Netherlands Evert.Lammerts@SARA.nl WUR, March 22, 2011 Lykle.Voort@SARA.nl
Program Introducing SARA & Computing (15 slides) Our Work Large-Scale Computing Discussion What you do What we can do together WUR, March 22, 2011
Our Work WUR, March 22, 2011
Facilitating Science in The Netherlands with Equipment for and Expertise on Large-Scale Computing, Large-Scale Data Storage, High-Performance Networking, eScience, and Visualization WUR, March 22, 2011
What We Do Operations Maintenance of physical infrastructure Renewing infrastructure Project Based Support Help scientists to use the infrastructure Consultancy for projects Development Services, interfaces, visualization tools, and so on Innovation Keep track of developments in the field Evaluation of new technologies in pilot projects WUR, March 22, 2011
How We Do It As partner in projects Usually larger; maybe in time, maybe in amount, maybe in ambition, maybe in perspective, ... Roles in organization, reporting, Infrastructure partners, in the broadest sense Using resource requests Typically dealing with one scientist or a small consortium, solving a certain problem (Hands-on) support and access to resources We help with the requests (this is simple!) WUR, March 22, 2011
WUR, March 22, 2011
Foundation National Compute Facilities Part of NWO, the Netherlands Organization for Scientific Research Resource requests for Huygens, Lisa and GPU WUR, March 22, 2011
A collaboration between NCF NIKHEF NBIC SARA Resource requests for Grid, Cloud and Hadoop WUR, March 22, 2011
Large-Scale Computing WUR, March 22, 2011
Parallelization: Amdahl's Law WUR, March 22, 2011
Data Parallelization WUR, March 22, 2011
For example BBMRI / Genome of The The Virtual Knowledge Netherlands (GvNL) Studio Alignment and of How do categories on sequenced genomes of Wikipedia evolve over 750 people time? 750 times the same Periodically look through pipeline of applications Wikipedia dumps and build category trees WUR, March 22, 2011
Task Parallelization WUR, March 22, 2011
For example CosmoGrid Simulate clusters of stars in a region of the universe Everything affects everything WUR, March 22, 2011
Scientific Computing in The Netherlands WUR, March 22, 2011
http://www.sara.nl WUR, March 22, 2011
PS Did you know we have placed a cluster at WUR? https://grid.sara.nl/wiki/index.php/Life_Science_Grid WUR, March 22, 2011

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Scientific computing in The Netherlands

  • 1. Large-Scale Scientific Computing in The Netherlands Evert.Lammerts@SARA.nl WUR, March 22, 2011 Lykle.Voort@SARA.nl
  • 2. Program Introducing SARA & Computing (15 slides) Our Work Large-Scale Computing Discussion What you do What we can do together WUR, March 22, 2011
  • 4. Facilitating Science in The Netherlands with Equipment for and Expertise on Large-Scale Computing, Large-Scale Data Storage, High-Performance Networking, eScience, and Visualization WUR, March 22, 2011
  • 5. What We Do Operations Maintenance of physical infrastructure Renewing infrastructure Project Based Support Help scientists to use the infrastructure Consultancy for projects Development Services, interfaces, visualization tools, and so on Innovation Keep track of developments in the field Evaluation of new technologies in pilot projects WUR, March 22, 2011
  • 6. How We Do It As partner in projects Usually larger; maybe in time, maybe in amount, maybe in ambition, maybe in perspective, ... Roles in organization, reporting, Infrastructure partners, in the broadest sense Using resource requests Typically dealing with one scientist or a small consortium, solving a certain problem (Hands-on) support and access to resources We help with the requests (this is simple!) WUR, March 22, 2011
  • 8. Foundation National Compute Facilities Part of NWO, the Netherlands Organization for Scientific Research Resource requests for Huygens, Lisa and GPU WUR, March 22, 2011
  • 9. A collaboration between NCF NIKHEF NBIC SARA Resource requests for Grid, Cloud and Hadoop WUR, March 22, 2011
  • 10. Large-Scale Computing WUR, March 22, 2011
  • 11. Parallelization: Amdahl's Law WUR, March 22, 2011
  • 12. Data Parallelization WUR, March 22, 2011
  • 13. For example BBMRI / Genome of The The Virtual Knowledge Netherlands (GvNL) Studio Alignment and of How do categories on sequenced genomes of Wikipedia evolve over 750 people time? 750 times the same Periodically look through pipeline of applications Wikipedia dumps and build category trees WUR, March 22, 2011
  • 14. Task Parallelization WUR, March 22, 2011
  • 15. For example CosmoGrid Simulate clusters of stars in a region of the universe Everything affects everything WUR, March 22, 2011
  • 16. Scientific Computing in The Netherlands WUR, March 22, 2011
  • 17. http://www.sara.nl WUR, March 22, 2011
  • 18. PS Did you know we have placed a cluster at WUR? https://grid.sara.nl/wiki/index.php/Life_Science_Grid WUR, March 22, 2011