ºÝºÝߣ

ºÝºÝߣShare a Scribd company logo
Introduction
Wild-type
Methods
•Plaques on Plate are bull’s eye, 2-3mm after 24hrs
•Electron microscopy- pure population
•Size of Genome: about 70,000 bp
•Gel electrophoresis: cluster assignment H
•Future Directions: Kill curve determination
Results
Discussion
Adsorption of the phagedegradative enzymes or
contraction of the sheath & tail @ cell wall 
Enzymes degrade bacterial DNA,  genetic
recombination  lytic or a lysogenic cycle
Michaelangelo temperate phage
model: Mycobacterium smegmatis (M. smeg)
We hypothesize that a bacteriophage can
be isolated and purified from a soil
sample; that it can be characterized into a
cluster; and that infectivity can be
determined in a kill curve
soil sample enrichment
Purification: streak test,
and titer assay.
Acknowledgments: Sea faculty Sea Teaching
Assistants, Lee Graham, The Hatfull laboratory At
Pittsburgh, HHMI, Department of Biological
Sciences
Figure 1) Agar plate with plaques in M.smeg
bacterial lawn. Shown is a Bull’s eye
morphology. Note the clear sterile center and
the turbid outer rings
Figure 2) a typical titer assay with plaques in
the M.smeg bacterial lawn. Note the density
of the plaques- web pattern
Figure 4) Michaelangelo bacteriophage
electron microscopy image. At the tip of the
tail there is a clover shaped attachment site.
Figure 3) Michaelangelo electron microscopy.
Note the curved tail characteristic of
siphoviridae, icosahedral capsid and 2.5:1
Head:tail ratio
Figure 5) Restriction digest. Bands left to
right: 1-kb ladder, undigested DNA, BamH1,
Cla1, EcoR1, HaeIII, HindIII. Bam H1 did not
cut, while HaeII, EcoR1 and HindIII cut. In
particular, HaeIII cut into such small
fragments it ran off the gel. Cla1 had the
clearest bands
Stock solution: Medium and high titer lysates
DNA extraction: alcohol precipitation
Restriction digest and gel eletrophoresis
M. Smeg colony formation
% survival and Kill curve
claI Ìý Ìý Ìý
DistanceÌý
traveledÌý
(cm)
logÌý
fragmentÌý
length
FragmentÌý
lengthÌý(bd)
estimateÌýofÌý
genomeÌýsizeÌý
(bp)
1.5 4.05 11220 79452
1.6 4.01 10232Ìý
1.6 4.01 10232Ìý
1.8 3.9 7943Ìý
2.2 3.8 6309Ìý
2.5 3.7 5011Ìý
2.7 3.7 5011Ìý
2.9 3.6 3981Ìý
3 3.6 3981Ìý
3.3 3.5 3162Ìý
3.4 3.4 2511Ìý
3.5 3.4 2511Ìý
3.6 3.4 2511Ìý
3.7 3.3 1995Ìý
4 3.2 1584Ìý
4.5 3.1 1258Ìý
Bull’s eye morphology
Web pattern Gel electrophoresis
Siphoviridae
Attachment site

More Related Content

Viewers also liked (13)

6)pasos a seguir para descargar slideshare6)pasos a seguir para descargar slideshare
6)pasos a seguir para descargar slideshare
arcangelmarkos
Ìý
3) caracteristicas contraseña segura3) caracteristicas contraseña segura
3) caracteristicas contraseña segura
arcangelmarkos
Ìý
Fantasmas en la casa rodanteFantasmas en la casa rodante
Fantasmas en la casa rodante
Paula Andree
Ìý
  mitos y leyendas de chile  mitos y leyendas de chile
mitos y leyendas de chile
Paula Andree
Ìý
Chapter 11 Biotechnology
Chapter 11 BiotechnologyChapter 11 Biotechnology
Chapter 11 Biotechnology
iowahawki
Ìý
Restriction enzymes treatment of DNA
Restriction enzymes treatment of DNARestriction enzymes treatment of DNA
Restriction enzymes treatment of DNA
Hadia Haroon
Ìý
Carbohydrates
Carbohydrates Carbohydrates
Carbohydrates
Marwa A.A. Fayed
Ìý
Restriction enzyme
Restriction enzymeRestriction enzyme
Restriction enzyme
Muhammad Luthfan
Ìý
Dna fingerprinting!
Dna fingerprinting!Dna fingerprinting!
Dna fingerprinting!
megrie
Ìý
Bacterial plasmids
Bacterial plasmidsBacterial plasmids
Bacterial plasmids
priyanka raviraj
Ìý
Dna fingerprinting
Dna fingerprintingDna fingerprinting
Dna fingerprinting
14cindta
Ìý
Gel electrophoresis power point
Gel electrophoresis power pointGel electrophoresis power point
Gel electrophoresis power point
ellie4goals
Ìý
Agarose Gel Electrophoresis
Agarose Gel ElectrophoresisAgarose Gel Electrophoresis
Agarose Gel Electrophoresis
Harshit Jadav
Ìý
6)pasos a seguir para descargar slideshare6)pasos a seguir para descargar slideshare
6)pasos a seguir para descargar slideshare
arcangelmarkos
Ìý
3) caracteristicas contraseña segura3) caracteristicas contraseña segura
3) caracteristicas contraseña segura
arcangelmarkos
Ìý
Fantasmas en la casa rodanteFantasmas en la casa rodante
Fantasmas en la casa rodante
Paula Andree
Ìý
  mitos y leyendas de chile  mitos y leyendas de chile
mitos y leyendas de chile
Paula Andree
Ìý
Chapter 11 Biotechnology
Chapter 11 BiotechnologyChapter 11 Biotechnology
Chapter 11 Biotechnology
iowahawki
Ìý
Restriction enzymes treatment of DNA
Restriction enzymes treatment of DNARestriction enzymes treatment of DNA
Restriction enzymes treatment of DNA
Hadia Haroon
Ìý
Dna fingerprinting!
Dna fingerprinting!Dna fingerprinting!
Dna fingerprinting!
megrie
Ìý
Dna fingerprinting
Dna fingerprintingDna fingerprinting
Dna fingerprinting
14cindta
Ìý
Gel electrophoresis power point
Gel electrophoresis power pointGel electrophoresis power point
Gel electrophoresis power point
ellie4goals
Ìý
Agarose Gel Electrophoresis
Agarose Gel ElectrophoresisAgarose Gel Electrophoresis
Agarose Gel Electrophoresis
Harshit Jadav
Ìý

Similar to SEA Poster!!! (20)

ps km FINAL POSTER PROJECT
ps km FINAL POSTER PROJECTps km FINAL POSTER PROJECT
ps km FINAL POSTER PROJECT
Katherine Milliken
Ìý
103BL-F14_PosterSmallQuality_PhageHunters
103BL-F14_PosterSmallQuality_PhageHunters103BL-F14_PosterSmallQuality_PhageHunters
103BL-F14_PosterSmallQuality_PhageHunters
Eric Zhou
Ìý
haemocytometer (AARTI PAL).pptx M Pharmacy
haemocytometer (AARTI PAL).pptx M Pharmacyhaemocytometer (AARTI PAL).pptx M Pharmacy
haemocytometer (AARTI PAL).pptx M Pharmacy
AartiPal23
Ìý
Advances in Capillary Liquid Chromatography for High-Throughput Top Down Prot...
Advances in Capillary Liquid Chromatography for High-Throughput Top Down Prot...Advances in Capillary Liquid Chromatography for High-Throughput Top Down Prot...
Advances in Capillary Liquid Chromatography for High-Throughput Top Down Prot...
Expedeon
Ìý
The Final Presentation (1) (1)
The Final Presentation (1) (1)The Final Presentation (1) (1)
The Final Presentation (1) (1)
Kristen Tripicchio
Ìý
crystal structure of human fibrinogen
crystal structure of human fibrinogencrystal structure of human fibrinogen
crystal structure of human fibrinogen
Afnan Zuiter
Ìý
Biochemistry, Volume 2, Second Edition The Chemical Reactions of Living Cells...
Biochemistry, Volume 2, Second Edition The Chemical Reactions of Living Cells...Biochemistry, Volume 2, Second Edition The Chemical Reactions of Living Cells...
Biochemistry, Volume 2, Second Edition The Chemical Reactions of Living Cells...
ssusere91340
Ìý
electrophoresis
electrophoresiselectrophoresis
electrophoresis
sarojben
Ìý
parasite poster for linkin
parasite poster for linkinparasite poster for linkin
parasite poster for linkin
Rachael Swedberg
Ìý
103BL-S14_BreakphageClub_PosterFinalSmallFile
103BL-S14_BreakphageClub_PosterFinalSmallFile103BL-S14_BreakphageClub_PosterFinalSmallFile
103BL-S14_BreakphageClub_PosterFinalSmallFile
Fernando Morales
Ìý
Microbial Phylogenomics (EVE161) Class 13 - Comparative Genomics
Microbial Phylogenomics (EVE161) Class 13 - Comparative GenomicsMicrobial Phylogenomics (EVE161) Class 13 - Comparative Genomics
Microbial Phylogenomics (EVE161) Class 13 - Comparative Genomics
Jonathan Eisen
Ìý
Poster
Poster Poster
Poster
jabeenteymour
Ìý
Covalent Versus Electrostatic Attachment of Yeast Cytochrome c to a Fused Si...
Covalent Versus Electrostatic Attachment of Yeast Cytochrome c to a Fused Si...Covalent Versus Electrostatic Attachment of Yeast Cytochrome c to a Fused Si...
Covalent Versus Electrostatic Attachment of Yeast Cytochrome c to a Fused Si...
smistry_us
Ìý
Butler Summer Institute Presentatin
Butler Summer Institute PresentatinButler Summer Institute Presentatin
Butler Summer Institute Presentatin
guestee6b24
Ìý
Project Hollywood
Project Hollywood Project Hollywood
Project Hollywood
F M
Ìý
Protein Crystallography of Lysozyme
Protein Crystallography of LysozymeProtein Crystallography of Lysozyme
Protein Crystallography of Lysozyme
Guillermo Llamas
Ìý
Chlorella Vulgaris Alleviates Lead-induced Testicular Toxicity Better than Zi...
Chlorella Vulgaris Alleviates Lead-induced Testicular Toxicity Better than Zi...Chlorella Vulgaris Alleviates Lead-induced Testicular Toxicity Better than Zi...
Chlorella Vulgaris Alleviates Lead-induced Testicular Toxicity Better than Zi...
Prof. Dr. Hesham N. Mustafa 🩺
Ìý
Bacterial Taxonomy.pdf
Bacterial Taxonomy.pdfBacterial Taxonomy.pdf
Bacterial Taxonomy.pdf
OENDRILDAS
Ìý
The Impact of Lysogenic and Tail Assembly Chaperone Proteins on the Life Cycl...
The Impact of Lysogenic and Tail Assembly Chaperone Proteins on the Life Cycl...The Impact of Lysogenic and Tail Assembly Chaperone Proteins on the Life Cycl...
The Impact of Lysogenic and Tail Assembly Chaperone Proteins on the Life Cycl...
Wyatt Nelson
Ìý
5
55
5
Sanjeev kumar Jain
Ìý
ps km FINAL POSTER PROJECT
ps km FINAL POSTER PROJECTps km FINAL POSTER PROJECT
ps km FINAL POSTER PROJECT
Katherine Milliken
Ìý
103BL-F14_PosterSmallQuality_PhageHunters
103BL-F14_PosterSmallQuality_PhageHunters103BL-F14_PosterSmallQuality_PhageHunters
103BL-F14_PosterSmallQuality_PhageHunters
Eric Zhou
Ìý
haemocytometer (AARTI PAL).pptx M Pharmacy
haemocytometer (AARTI PAL).pptx M Pharmacyhaemocytometer (AARTI PAL).pptx M Pharmacy
haemocytometer (AARTI PAL).pptx M Pharmacy
AartiPal23
Ìý
Advances in Capillary Liquid Chromatography for High-Throughput Top Down Prot...
Advances in Capillary Liquid Chromatography for High-Throughput Top Down Prot...Advances in Capillary Liquid Chromatography for High-Throughput Top Down Prot...
Advances in Capillary Liquid Chromatography for High-Throughput Top Down Prot...
Expedeon
Ìý
The Final Presentation (1) (1)
The Final Presentation (1) (1)The Final Presentation (1) (1)
The Final Presentation (1) (1)
Kristen Tripicchio
Ìý
crystal structure of human fibrinogen
crystal structure of human fibrinogencrystal structure of human fibrinogen
crystal structure of human fibrinogen
Afnan Zuiter
Ìý
Biochemistry, Volume 2, Second Edition The Chemical Reactions of Living Cells...
Biochemistry, Volume 2, Second Edition The Chemical Reactions of Living Cells...Biochemistry, Volume 2, Second Edition The Chemical Reactions of Living Cells...
Biochemistry, Volume 2, Second Edition The Chemical Reactions of Living Cells...
ssusere91340
Ìý
electrophoresis
electrophoresiselectrophoresis
electrophoresis
sarojben
Ìý
parasite poster for linkin
parasite poster for linkinparasite poster for linkin
parasite poster for linkin
Rachael Swedberg
Ìý
103BL-S14_BreakphageClub_PosterFinalSmallFile
103BL-S14_BreakphageClub_PosterFinalSmallFile103BL-S14_BreakphageClub_PosterFinalSmallFile
103BL-S14_BreakphageClub_PosterFinalSmallFile
Fernando Morales
Ìý
Microbial Phylogenomics (EVE161) Class 13 - Comparative Genomics
Microbial Phylogenomics (EVE161) Class 13 - Comparative GenomicsMicrobial Phylogenomics (EVE161) Class 13 - Comparative Genomics
Microbial Phylogenomics (EVE161) Class 13 - Comparative Genomics
Jonathan Eisen
Ìý
Covalent Versus Electrostatic Attachment of Yeast Cytochrome c to a Fused Si...
Covalent Versus Electrostatic Attachment of Yeast Cytochrome c to a Fused Si...Covalent Versus Electrostatic Attachment of Yeast Cytochrome c to a Fused Si...
Covalent Versus Electrostatic Attachment of Yeast Cytochrome c to a Fused Si...
smistry_us
Ìý
Butler Summer Institute Presentatin
Butler Summer Institute PresentatinButler Summer Institute Presentatin
Butler Summer Institute Presentatin
guestee6b24
Ìý
Project Hollywood
Project Hollywood Project Hollywood
Project Hollywood
F M
Ìý
Protein Crystallography of Lysozyme
Protein Crystallography of LysozymeProtein Crystallography of Lysozyme
Protein Crystallography of Lysozyme
Guillermo Llamas
Ìý
Chlorella Vulgaris Alleviates Lead-induced Testicular Toxicity Better than Zi...
Chlorella Vulgaris Alleviates Lead-induced Testicular Toxicity Better than Zi...Chlorella Vulgaris Alleviates Lead-induced Testicular Toxicity Better than Zi...
Chlorella Vulgaris Alleviates Lead-induced Testicular Toxicity Better than Zi...
Prof. Dr. Hesham N. Mustafa 🩺
Ìý
Bacterial Taxonomy.pdf
Bacterial Taxonomy.pdfBacterial Taxonomy.pdf
Bacterial Taxonomy.pdf
OENDRILDAS
Ìý
The Impact of Lysogenic and Tail Assembly Chaperone Proteins on the Life Cycl...
The Impact of Lysogenic and Tail Assembly Chaperone Proteins on the Life Cycl...The Impact of Lysogenic and Tail Assembly Chaperone Proteins on the Life Cycl...
The Impact of Lysogenic and Tail Assembly Chaperone Proteins on the Life Cycl...
Wyatt Nelson
Ìý

SEA Poster!!!

  • 1. Introduction Wild-type Methods •Plaques on Plate are bull’s eye, 2-3mm after 24hrs •Electron microscopy- pure population •Size of Genome: about 70,000 bp •Gel electrophoresis: cluster assignment H •Future Directions: Kill curve determination Results Discussion Adsorption of the phagedegradative enzymes or contraction of the sheath & tail @ cell wall  Enzymes degrade bacterial DNA,  genetic recombination  lytic or a lysogenic cycle Michaelangelo temperate phage model: Mycobacterium smegmatis (M. smeg) We hypothesize that a bacteriophage can be isolated and purified from a soil sample; that it can be characterized into a cluster; and that infectivity can be determined in a kill curve soil sample enrichment Purification: streak test, and titer assay. Acknowledgments: Sea faculty Sea Teaching Assistants, Lee Graham, The Hatfull laboratory At Pittsburgh, HHMI, Department of Biological Sciences Figure 1) Agar plate with plaques in M.smeg bacterial lawn. Shown is a Bull’s eye morphology. Note the clear sterile center and the turbid outer rings Figure 2) a typical titer assay with plaques in the M.smeg bacterial lawn. Note the density of the plaques- web pattern Figure 4) Michaelangelo bacteriophage electron microscopy image. At the tip of the tail there is a clover shaped attachment site. Figure 3) Michaelangelo electron microscopy. Note the curved tail characteristic of siphoviridae, icosahedral capsid and 2.5:1 Head:tail ratio Figure 5) Restriction digest. Bands left to right: 1-kb ladder, undigested DNA, BamH1, Cla1, EcoR1, HaeIII, HindIII. Bam H1 did not cut, while HaeII, EcoR1 and HindIII cut. In particular, HaeIII cut into such small fragments it ran off the gel. Cla1 had the clearest bands Stock solution: Medium and high titer lysates DNA extraction: alcohol precipitation Restriction digest and gel eletrophoresis M. Smeg colony formation % survival and Kill curve claI Ìý Ìý Ìý DistanceÌý traveledÌý (cm) logÌý fragmentÌý length FragmentÌý lengthÌý(bd) estimateÌýofÌý genomeÌýsizeÌý (bp) 1.5 4.05 11220 79452 1.6 4.01 10232Ìý 1.6 4.01 10232Ìý 1.8 3.9 7943Ìý 2.2 3.8 6309Ìý 2.5 3.7 5011Ìý 2.7 3.7 5011Ìý 2.9 3.6 3981Ìý 3 3.6 3981Ìý 3.3 3.5 3162Ìý 3.4 3.4 2511Ìý 3.5 3.4 2511Ìý 3.6 3.4 2511Ìý 3.7 3.3 1995Ìý 4 3.2 1584Ìý 4.5 3.1 1258Ìý Bull’s eye morphology Web pattern Gel electrophoresis Siphoviridae Attachment site