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VectorBase Population Data Das Tutorial

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Yoosook Lee

The document provides a tutorial on how to attach a DAS server to the Ensembl Genome Browser to view external data sources. The steps include selecting a species on the Ensembl homepage, choosing the "Add custom data" option on the location view page, selecting "Attach DAS" from the menu, entering the DAS server address, choosing the desired data sources, and making queries using the start, end, and chromosome text boxes to view information from the external sources.

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Tutorial: Attach a DAS Server to the Ensembl Genome Browser
Ensemble Genome Browser Go to the Ensemble Genome Browser main page and select the specie to which the information belongs from the menu. link: http://www.ensembl.org/index.html
Selecting the Sample Entry Point This menu is going to appear at the top left part of the page. Here we select the location sample entry point.
Ensemble Genome Browser: Location view In this view we are going to add the data from the Proserver. Click on the Add custom data to page link
Attaching DAS Data to the Genome Browser Select Attach DAS from this menu Type the address of the DAS server and click the Next button.
Selecting Data Sources Select the data sources to be displayed in the Genome Browser. Tick them and press the Next button
Data is Ready for Use!!! Close the window and it will take you to the Location View. When you see this message, you can now see the Proservers data in the Ensemble Genome Browser.
Query Example Now we can make Chromosome Start point End point queries using the three text boxes at the bottom of the page
Results Information about the Data source Region between the region. start and end point of the query

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VectorBase Population Data Das Tutorial

  • 1. Tutorial: Attach a DAS Server to the Ensembl Genome Browser
  • 2. Ensemble Genome Browser Go to the Ensemble Genome Browser main page and select the specie to which the information belongs from the menu. link: http://www.ensembl.org/index.html
  • 3. Selecting the Sample Entry Point This menu is going to appear at the top left part of the page. Here we select the location sample entry point.
  • 4. Ensemble Genome Browser: Location view In this view we are going to add the data from the Proserver. Click on the Add custom data to page link
  • 5. Attaching DAS Data to the Genome Browser Select Attach DAS from this menu Type the address of the DAS server and click the Next button.
  • 6. Selecting Data Sources Select the data sources to be displayed in the Genome Browser. Tick them and press the Next button
  • 7. Data is Ready for Use!!! Close the window and it will take you to the Location View. When you see this message, you can now see the Proservers data in the Ensemble Genome Browser.
  • 8. Query Example Now we can make Chromosome Start point End point queries using the three text boxes at the bottom of the page
  • 9. Results Information about the Data source Region between the region. start and end point of the query