YSNPs, Packs and Trees
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The document discusses YSNP haplotrees and SNP packs at Family Tree DNA (FTDNA). It notes that the yHaplotree currently has over 23,000 SNPs and 6,728 haplogroup labels, up significantly from 2015. SNP packs are carefully designed panels of relevant SNPs that allow testers to efficiently move down the haplotree, though they cannot discover new haplogroups. There are currently over 75 active SNP packs covering 8 major haplogroups. The process for developing and validating new SNP packs is also outlined.
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YSNPs, Packs and Trees
- 1. YSNPs, Packs and Trees Resurgence of the FTDNA yHaplotree SNP Packs - A status update
- 2. Haplotree today May 2015 6,556 SNPs Today 23,767 SNPs Unique haplogroup labels 6,728 Total terminal nodes 3,192
- 3. Haplotree update guidelines 1. SNP Name*, position (hg19), mutation 2. Proposed phylogeny/SNP positioning 3. Provide kit proofs 4. Avoid heavily recurrent, STR embedded, and other unreliable SNPs. 5. Must be FTDNA generated data 6. No private SNPs (2+ required)
- 4. SNP Packs An Overview Carefully designed panel of SNPs relevant and encompassing to a specific group (M343, L21 etc.) Cost efficient method to move a tester down the tree Can match Can NOT discover*
- 5. SNP Packs 77 active panels (~35 in design) 8 haplogroups (E, G, I, J, N, Q, R,T)
- 6. SNP pack process Admins submit panel proposal (140 max) Computational QC (Dr. Nossa) Phylogenetic analysis, tree building Validation Content finalization Release
- 7. Questions? I have a BigY, do I need a SNP Pack? Can I buy just one SNP?