�ݺ�ߣshows by User: kbradnam

�ݺ�ߣshows by User: kbradnam / http://www.slideshare.net/images/logo.gif �ݺ�ߣshows by User: kbradnam / Wed, 16 Sep 2015 04:48:56 GMT �ݺ�ߣShare feed for �ݺ�ߣshows by User: kbradnam 13 questions you might have about galaxy /slideshow/13-questions-you-might-have-about-galaxy/52831472 13questionsyoumighthaveaboutgalaxy-150916044857-lva1-app6892
These slides are adapted from a talk I gave at a Galaxy workshop run by the UC Davis Bioinformatics Core.]]>
These slides are adapted from a talk I gave at a Galaxy workshop run by the UC Davis Bioinformatics Core.]]> Wed, 16 Sep 2015 04:48:56 GMT /slideshow/13-questions-you-might-have-about-galaxy/52831472 kbradnam@slideshare.net(kbradnam) 13 questions you might have about galaxy kbradnam These slides are adapted from a talk I gave at a Galaxy workshop run by the UC Davis Bioinformatics Core. <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/13questionsyoumighthaveaboutgalaxy-150916044857-lva1-app6892-thumbnail.jpg?width=120&height=120&fit=bounds" /> These slides are adapted from a talk I gave at a Galaxy workshop run by the UC Davis Bioinformatics Core.

13 questions you might have about galaxy from Keith Bradnam

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0 Genome assembly: the art of trying to make one big thing from millions of very small things (v1.1 - with notes) /slideshow/genome-assembly-the-art-of-trying-to-make-one-big-thing-from-millions-of-very-small-things-v11-with-notes/49707140 genomeassembly-theartoftryingtomakeonebigthingfrommillionsofverysmallthingsv1-150622213539-lva1-app6891
A talk about genome assembly. Largely aimed at people new to the field, this slide deck is an updated version of a talk that I first gave last year and which I recently presented as part of a UC Davis Bioinformatics Core training workshop. Author: Keith Bradnam, Genome Center, UC Davis This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.]]>
A talk about genome assembly. Largely aimed at people new to the field, this slide deck is an updated version of a talk that I first gave last year and which I recently presented as part of a UC Davis Bioinformatics Core training workshop. Author: Keith Bradnam, Genome Center, UC Davis This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.]]> Mon, 22 Jun 2015 21:35:39 GMT /slideshow/genome-assembly-the-art-of-trying-to-make-one-big-thing-from-millions-of-very-small-things-v11-with-notes/49707140 kbradnam@slideshare.net(kbradnam) Genome assembly: the art of trying to make one big thing from millions of very small things (v1.1 - with notes) kbradnam A talk about genome assembly. Largely aimed at people new to the field, this slide deck is an updated version of a talk that I first gave last year and which I recently presented as part of a UC Davis Bioinformatics Core training workshop. Author: Keith Bradnam, Genome Center, UC Davis This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License. <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/genomeassembly-theartoftryingtomakeonebigthingfrommillionsofverysmallthingsv1-150622213539-lva1-app6891-thumbnail.jpg?width=120&height=120&fit=bounds" /> A talk about genome assembly. Largely aimed at people new to the field, this slide deck is an updated version of a talk that I first gave last year and which I recently presented as part of a UC Davis Bioinformatics Core training workshop. Author: Keith Bradnam, Genome Center, UC Davis This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.

Genome assembly: the art of trying to make one big thing from millions of very small things (v1.1 - with notes) from Keith Bradnam

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0 This bioinformatics lesson is brought to you by the letter 'W' /slideshow/this-bioinformatics-lesson-is-brought-to-you-by-the-letter-w/49701124 thisbioinformaticslessonisbroughttoyoubytheletterw-withnotes-150622185352-lva1-app6892
Some tips on Unix and Bioinformatics. 'W' is for 'Worfklows', 'What?', and 'Why?' This was a talk given at UC Davis on 15th June 2015 as part of a Bioinformatics Core teaching workshop. Author: Keith Bradnam, Genome Center, UC Davis. This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.]]>
Some tips on Unix and Bioinformatics. 'W' is for 'Worfklows', 'What?', and 'Why?' This was a talk given at UC Davis on 15th June 2015 as part of a Bioinformatics Core teaching workshop. Author: Keith Bradnam, Genome Center, UC Davis. This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.]]> Mon, 22 Jun 2015 18:53:52 GMT /slideshow/this-bioinformatics-lesson-is-brought-to-you-by-the-letter-w/49701124 kbradnam@slideshare.net(kbradnam) This bioinformatics lesson is brought to you by the letter 'W' kbradnam Some tips on Unix and Bioinformatics. 'W' is for 'Worfklows', 'What?', and 'Why?' This was a talk given at UC Davis on 15th June 2015 as part of a Bioinformatics Core teaching workshop. Author: Keith Bradnam, Genome Center, UC Davis. This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License. <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/thisbioinformaticslessonisbroughttoyoubytheletterw-withnotes-150622185352-lva1-app6892-thumbnail.jpg?width=120&height=120&fit=bounds" /> Some tips on Unix and Bioinformatics. 'W' is for 'Worfklows', 'What?', and 'Why?' This was a talk given at UC Davis on 15th June 2015 as part of a Bioinformatics Core teaching workshop. Author: Keith Bradnam, Genome Center, UC Davis. This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.

This bioinformatics lesson is brought to you by the letter 'W' from Keith Bradnam

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0 This bioinformatics lesson is brought to you by the letter 'T' /slideshow/this-bioinformatics-lesson-is-brought-to-you-by-the-letter-t/49701111 thisbioinformaticslessonisbroughttoyoubythelettert-withnotes-150622185341-lva1-app6892
Some tips on Unix and Bioinformatics. 'T' is for 'Text editors', 'Time', and 'Tab-completion' This was a talk given at UC Davis on 15th June 2015 as part of a Bioinformatics Core teaching workshop. Author: Keith Bradnam, Genome Center, UC Davis. This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.]]>
Some tips on Unix and Bioinformatics. 'T' is for 'Text editors', 'Time', and 'Tab-completion' This was a talk given at UC Davis on 15th June 2015 as part of a Bioinformatics Core teaching workshop. Author: Keith Bradnam, Genome Center, UC Davis. This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.]]> Mon, 22 Jun 2015 18:53:40 GMT /slideshow/this-bioinformatics-lesson-is-brought-to-you-by-the-letter-t/49701111 kbradnam@slideshare.net(kbradnam) This bioinformatics lesson is brought to you by the letter 'T' kbradnam Some tips on Unix and Bioinformatics. 'T' is for 'Text editors', 'Time', and 'Tab-completion' This was a talk given at UC Davis on 15th June 2015 as part of a Bioinformatics Core teaching workshop. Author: Keith Bradnam, Genome Center, UC Davis. This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License. <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/thisbioinformaticslessonisbroughttoyoubythelettert-withnotes-150622185341-lva1-app6892-thumbnail.jpg?width=120&height=120&fit=bounds" /> Some tips on Unix and Bioinformatics. 'T' is for 'Text editors', 'Time', and 'Tab-completion' This was a talk given at UC Davis on 15th June 2015 as part of a Bioinformatics Core teaching workshop. Author: Keith Bradnam, Genome Center, UC Davis. This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.

This bioinformatics lesson is brought to you by the letter 'T' from Keith Bradnam

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0 This bioinformatics lesson is brought to you by the letter 'D' /slideshow/this-bioinformatics-lesson-is-brought-to-you-by-the-letter-d/49701107 thisbioinformaticslessonisbroughttoyoubytheletterd-withnotes-150622185338-lva1-app6892
Some tips on Unix and Bioinformatics. 'D' is for 'Default parameters', 'Danger', and 'Documentation' This was a talk given at UC Davis on 15th June 2015 as part of a Bioinformatics Core teaching workshop. Author: Keith Bradnam, Genome Center, UC Davis. This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.]]>
Some tips on Unix and Bioinformatics. 'D' is for 'Default parameters', 'Danger', and 'Documentation' This was a talk given at UC Davis on 15th June 2015 as part of a Bioinformatics Core teaching workshop. Author: Keith Bradnam, Genome Center, UC Davis. This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.]]> Mon, 22 Jun 2015 18:53:37 GMT /slideshow/this-bioinformatics-lesson-is-brought-to-you-by-the-letter-d/49701107 kbradnam@slideshare.net(kbradnam) This bioinformatics lesson is brought to you by the letter 'D' kbradnam Some tips on Unix and Bioinformatics. 'D' is for 'Default parameters', 'Danger', and 'Documentation' This was a talk given at UC Davis on 15th June 2015 as part of a Bioinformatics Core teaching workshop. Author: Keith Bradnam, Genome Center, UC Davis. This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License. <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/thisbioinformaticslessonisbroughttoyoubytheletterd-withnotes-150622185338-lva1-app6892-thumbnail.jpg?width=120&height=120&fit=bounds" /> Some tips on Unix and Bioinformatics. 'D' is for 'Default parameters', 'Danger', and 'Documentation' This was a talk given at UC Davis on 15th June 2015 as part of a Bioinformatics Core teaching workshop. Author: Keith Bradnam, Genome Center, UC Davis. This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.

This bioinformatics lesson is brought to you by the letter 'D' from Keith Bradnam

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0 Thoughts on the feasibility of an Assemblathon 3 contest /slideshow/thoughts-on-the-feasibility-of-an-assemblathon-3-contest/45431305 assemblathon3talk-150304103528-conversion-gate01
A *draft* version of a talk presented at the 2015 Genome 10K meeting. These are slides I prepared for my PI (Ian Korf) to use. The final version of the talk may differ substantially to what is shown here. This talk sets out some ideas as to what was bad about the Assemblathon 2 contest and how we could learn from this should there be an Assemblathon 3 contest.]]>
A *draft* version of a talk presented at the 2015 Genome 10K meeting. These are slides I prepared for my PI (Ian Korf) to use. The final version of the talk may differ substantially to what is shown here. This talk sets out some ideas as to what was bad about the Assemblathon 2 contest and how we could learn from this should there be an Assemblathon 3 contest.]]> Wed, 04 Mar 2015 10:35:28 GMT /slideshow/thoughts-on-the-feasibility-of-an-assemblathon-3-contest/45431305 kbradnam@slideshare.net(kbradnam) Thoughts on the feasibility of an Assemblathon 3 contest kbradnam A *draft* version of a talk presented at the 2015 Genome 10K meeting. These are slides I prepared for my PI (Ian Korf) to use. The final version of the talk may differ substantially to what is shown here. This talk sets out some ideas as to what was bad about the Assemblathon 2 contest and how we could learn from this should there be an Assemblathon 3 contest. <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/assemblathon3talk-150304103528-conversion-gate01-thumbnail.jpg?width=120&height=120&fit=bounds" /> A *draft* version of a talk presented at the 2015 Genome 10K meeting. These are slides I prepared for my PI (Ian Korf) to use. The final version of the talk may differ substantially to what is shown here. This talk sets out some ideas as to what was bad about the Assemblathon 2 contest and how we could learn from this should there be an Assemblathon 3 contest.

Thoughts on the feasibility of an Assemblathon 3 contest from Keith Bradnam

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0 Genome Assembly: the art of trying to make one BIG thing from millions of very small things /slideshow/genome-assembly-the-art-of-trying-to-make-one-big-thing-from-millions-of-very-small-things/44059298 2015-01-27-genomeassembly-theartoftryingtomakeonebigthingfrommillionsofverysmallthingscopy-withnotes-150129233402-conversion-gate01
A slide aimed at providing a broad overview of what genome assembly is, why it is important, and why it can be so difficult.]]>
A slide aimed at providing a broad overview of what genome assembly is, why it is important, and why it can be so difficult.]]> Thu, 29 Jan 2015 23:34:02 GMT /slideshow/genome-assembly-the-art-of-trying-to-make-one-big-thing-from-millions-of-very-small-things/44059298 kbradnam@slideshare.net(kbradnam) Genome Assembly: the art of trying to make one BIG thing from millions of very small things kbradnam A slide aimed at providing a broad overview of what genome assembly is, why it is important, and why it can be so difficult. <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/2015-01-27-genomeassembly-theartoftryingtomakeonebigthingfrommillionsofverysmallthingscopy-withnotes-150129233402-conversion-gate01-thumbnail.jpg?width=120&height=120&fit=bounds" /> A slide aimed at providing a broad overview of what genome assembly is, why it is important, and why it can be so difficult.

Genome Assembly: the art of trying to make one BIG thing from millions of very small things from Keith Bradnam

]]> 5968 14 https://cdn.slidesharecdn.com/ss_thumbnails/2015-01-27-genomeassembly-theartoftryingtomakeonebigthingfrommillionsofverysmallthingscopy-withnotes-150129233402-conversion-gate01-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post

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0 Genome assembly: then and now (with notes) — v1.2 /slideshow/genome-assembly-then-and-now-with-notes-v12/39300135 genomeassemblythenandnowwithnotesv1-140919132649-phpapp02
This was a talk given on 2014-09-17 for the Genome Center’s Bioinformatics Core as part of a 1 week workshop. It concerns the Assemblathon projects as well as other aspects relating to genome assembly. A version of this talk is also available on �ݺ�ߣshare without notes. Note, this is an evolving talk. There are older and newer versions of the talk also available on slideshare.]]>
This was a talk given on 2014-09-17 for the Genome Center’s Bioinformatics Core as part of a 1 week workshop. It concerns the Assemblathon projects as well as other aspects relating to genome assembly. A version of this talk is also available on �ݺ�ߣshare without notes. Note, this is an evolving talk. There are older and newer versions of the talk also available on slideshare.]]> Fri, 19 Sep 2014 13:26:48 GMT /slideshow/genome-assembly-then-and-now-with-notes-v12/39300135 kbradnam@slideshare.net(kbradnam) Genome assembly: then and now (with notes) — v1.2 kbradnam This was a talk given on 2014-09-17 for the Genome Center’s Bioinformatics Core as part of a 1 week workshop. It concerns the Assemblathon projects as well as other aspects relating to genome assembly. A version of this talk is also available on �ݺ�ߣshare without notes. Note, this is an evolving talk. There are older and newer versions of the talk also available on slideshare. <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/genomeassemblythenandnowwithnotesv1-140919132649-phpapp02-thumbnail.jpg?width=120&height=120&fit=bounds" /> This was a talk given on 2014-09-17 for the Genome Center’s Bioinformatics Core as part of a 1 week workshop. It concerns the Assemblathon projects as well as other aspects relating to genome assembly. A version of this talk is also available on �ݺ�ߣshare without notes. Note, this is an evolving talk. There are older and newer versions of the talk also available on slideshare.

Genome assembly: then and now (with notes) — v1.2 from Keith Bradnam

]]> 2084 6 https://cdn.slidesharecdn.com/ss_thumbnails/genomeassemblythenandnowwithnotesv1-140919132649-phpapp02-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post

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0 Genome assembly: then and now — v1.2 /slideshow/genome-assembly-then-and-now-v12/39300091 genomeassemblythenandnowv1-140919132513-phpapp01
This was a talk given on 2014-09-17 for the Genome Center’s Bioinformatics Core as part of a 1 week workshop. It concerns the Assemblathon projects as well as other aspects relating to genome assembly. A version of this talk is also available on �ݺ�ߣshare with embedded notes. Note, this is an evolving talk. There are older and newer versions of the talk also available on slideshare.]]>
This was a talk given on 2014-09-17 for the Genome Center’s Bioinformatics Core as part of a 1 week workshop. It concerns the Assemblathon projects as well as other aspects relating to genome assembly. A version of this talk is also available on �ݺ�ߣshare with embedded notes. Note, this is an evolving talk. There are older and newer versions of the talk also available on slideshare.]]> Fri, 19 Sep 2014 13:25:12 GMT /slideshow/genome-assembly-then-and-now-v12/39300091 kbradnam@slideshare.net(kbradnam) Genome assembly: then and now — v1.2 kbradnam This was a talk given on 2014-09-17 for the Genome Center’s Bioinformatics Core as part of a 1 week workshop. It concerns the Assemblathon projects as well as other aspects relating to genome assembly. A version of this talk is also available on �ݺ�ߣshare with embedded notes. Note, this is an evolving talk. There are older and newer versions of the talk also available on slideshare. <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/genomeassemblythenandnowv1-140919132513-phpapp01-thumbnail.jpg?width=120&height=120&fit=bounds" /> This was a talk given on 2014-09-17 for the Genome Center’s Bioinformatics Core as part of a 1 week workshop. It concerns the Assemblathon projects as well as other aspects relating to genome assembly. A version of this talk is also available on �ݺ�ߣshare with embedded notes. Note, this is an evolving talk. There are older and newer versions of the talk also available on slideshare.

Genome assembly: then and now — v1.2 from Keith Bradnam

]]> 2324 4 https://cdn.slidesharecdn.com/ss_thumbnails/genomeassemblythenandnowv1-140919132513-phpapp01-thumbnail.jpg?width=120&height=120&fit=bounds presentation Black http://activitystrea.ms/schema/1.0/post

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0 Genome assembly: then and now — v1.1 /slideshow/genome-assembly-then-and-now-36080806/36080806 2014-06-18-assemblathontalkforbioinformaticscoreworkshopwithoutnotes-140619151609-phpapp01
 This was a talk given on 2014-06-19 for the Genome Center’s Bioinformatics Core as part of a 1 week workshop on using Galaxy. It concerns the Assemblathon projects as well as other aspects relating to genome assembly. A version of this talk is also available on �ݺ�ߣshare with embedded notes. Note, this is an evolving talk. There are older and newer versions of the talk also available on slideshare.]]>
 This was a talk given on 2014-06-19 for the Genome Center’s Bioinformatics Core as part of a 1 week workshop on using Galaxy. It concerns the Assemblathon projects as well as other aspects relating to genome assembly. A version of this talk is also available on �ݺ�ߣshare with embedded notes. Note, this is an evolving talk. There are older and newer versions of the talk also available on slideshare.]]> Thu, 19 Jun 2014 15:16:09 GMT /slideshow/genome-assembly-then-and-now-36080806/36080806 kbradnam@slideshare.net(kbradnam) Genome assembly: then and now — v1.1 kbradnam  This was a talk given on 2014-06-19 for the Genome Center’s Bioinformatics Core as part of a 1 week workshop on using Galaxy. It concerns the Assemblathon projects as well as other aspects relating to genome assembly. A version of this talk is also available on �ݺ�ߣshare with embedded notes. Note, this is an evolving talk. There are older and newer versions of the talk also available on slideshare. <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/2014-06-18-assemblathontalkforbioinformaticscoreworkshopwithoutnotes-140619151609-phpapp01-thumbnail.jpg?width=120&height=120&fit=bounds" />  This was a talk given on 2014-06-19 for the Genome Center’s Bioinformatics Core as part of a 1 week workshop on using Galaxy. It concerns the Assemblathon projects as well as other aspects relating to genome assembly. A version of this talk is also available on �ݺ�ߣshare with embedded notes. Note, this is an evolving talk. There are older and newer versions of the talk also available on slideshare.

Genome assembly: then and now — v1.1 from Keith Bradnam

]]> 3418 11 https://cdn.slidesharecdn.com/ss_thumbnails/2014-06-18-assemblathontalkforbioinformaticscoreworkshopwithoutnotes-140619151609-phpapp01-thumbnail.jpg?width=120&height=120&fit=bounds presentation White http://activitystrea.ms/schema/1.0/post

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0 Genome assembly: then and now — with notes — v1.1 /slideshow/genome-assembly-then-and-now/36080690 2014-06-18-assemblathontalkforbioinformaticscoreworkshop-140619151218-phpapp02
This was a talk given on 2014-06-19 for the Genome Center’s Bioinformatics Core as part of a 1 week workshop on using Galaxy. It concerns the Assemblathon projects as well as other aspects relating to genome assembly. A version of this talk is also available on �ݺ�ߣshare without embedded notes. Note, this is an evolving talk. There are older and newer versions of the talk also available on slideshare.]]>
This was a talk given on 2014-06-19 for the Genome Center’s Bioinformatics Core as part of a 1 week workshop on using Galaxy. It concerns the Assemblathon projects as well as other aspects relating to genome assembly. A version of this talk is also available on �ݺ�ߣshare without embedded notes. Note, this is an evolving talk. There are older and newer versions of the talk also available on slideshare.]]> Thu, 19 Jun 2014 15:12:18 GMT /slideshow/genome-assembly-then-and-now/36080690 kbradnam@slideshare.net(kbradnam) Genome assembly: then and now — with notes — v1.1 kbradnam This was a talk given on 2014-06-19 for the Genome Center’s Bioinformatics Core as part of a 1 week workshop on using Galaxy. It concerns the Assemblathon projects as well as other aspects relating to genome assembly. A version of this talk is also available on �ݺ�ߣshare without embedded notes. Note, this is an evolving talk. There are older and newer versions of the talk also available on slideshare. <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/2014-06-18-assemblathontalkforbioinformaticscoreworkshop-140619151218-phpapp02-thumbnail.jpg?width=120&height=120&fit=bounds" /> This was a talk given on 2014-06-19 for the Genome Center’s Bioinformatics Core as part of a 1 week workshop on using Galaxy. It concerns the Assemblathon projects as well as other aspects relating to genome assembly. A version of this talk is also available on �ݺ�ߣshare without embedded notes. Note, this is an evolving talk. There are older and newer versions of the talk also available on slideshare.

Genome assembly: then and now — with notes — v1.1 from Keith Bradnam

]]> 2012 7 https://cdn.slidesharecdn.com/ss_thumbnails/2014-06-18-assemblathontalkforbioinformaticscoreworkshop-140619151218-phpapp02-thumbnail.jpg?width=120&height=120&fit=bounds presentation White http://activitystrea.ms/schema/1.0/post

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0 What's in a name? Better vocabularies = better bioinformatics? /slideshow/2013-1021-lab-talk-about-naming-problems-in-bioinformatics/27426813 2013-10-21-labtalkaboutnamingproblemsinbioinformatics-131021163030-phpapp01
Most of the pain and suffering that occurs in bioinformatics happens when database identifier 'A' in file 1, doesn't quite match database identifier 'B' in file 2...even when they are supposed to be the same identifier. Things don't always match up for a number of reasons, most of which *should* be under our control. This talk covers a few points relating to this and briefly discusses how we should all be using curated ontologies to describe our data.]]>
Most of the pain and suffering that occurs in bioinformatics happens when database identifier 'A' in file 1, doesn't quite match database identifier 'B' in file 2...even when they are supposed to be the same identifier. Things don't always match up for a number of reasons, most of which *should* be under our control. This talk covers a few points relating to this and briefly discusses how we should all be using curated ontologies to describe our data.]]> Mon, 21 Oct 2013 16:30:30 GMT /slideshow/2013-1021-lab-talk-about-naming-problems-in-bioinformatics/27426813 kbradnam@slideshare.net(kbradnam) What's in a name? Better vocabularies = better bioinformatics? kbradnam Most of the pain and suffering that occurs in bioinformatics happens when database identifier 'A' in file 1, doesn't quite match database identifier 'B' in file 2...even when they are supposed to be the same identifier. Things don't always match up for a number of reasons, most of which *should* be under our control. This talk covers a few points relating to this and briefly discusses how we should all be using curated ontologies to describe our data. <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/2013-10-21-labtalkaboutnamingproblemsinbioinformatics-131021163030-phpapp01-thumbnail.jpg?width=120&height=120&fit=bounds" /> Most of the pain and suffering that occurs in bioinformatics happens when database identifier 'A' in file 1, doesn't quite match database identifier 'B' in file 2...even when they are supposed to be the same identifier. Things don't always match up for a number of reasons, most of which *should* be under our control. This talk covers a few points relating to this and briefly discusses how we should all be using curated ontologies to describe our data.

What's in a name? Better vocabularies = better bioinformatics? from Keith Bradnam

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0 The art of good science writing /slideshow/the-art-of-good-science-writing/23768208 theartofgoodsciencewriting-130701232848-phpapp01
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]]> Mon, 01 Jul 2013 23:28:48 GMT /slideshow/the-art-of-good-science-writing/23768208 kbradnam@slideshare.net(kbradnam) The art of good science writing kbradnam <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/theartofgoodsciencewriting-130701232848-phpapp01-thumbnail.jpg?width=120&height=120&fit=bounds" />

The art of good science writing from Keith Bradnam

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0 Genome assembly: then and now — v1.0 /slideshow/assemblathon-2-talk/19974246 assemblathon2talk-130425131109-phpapp02
A talk that I gave to a a general audience at UC Davis. �ݺ�ߣs were also used for Prof. Ian Korf's presentation at the Genome 10K workshop (May 25th, 2013). This talk mostly concerns the results of the Assemblathon 2 contest, but also covers other issues relating to genome assembly. Note, this talk has been superseded by updated versions (also available on slideshare)!]]>
A talk that I gave to a a general audience at UC Davis. �ݺ�ߣs were also used for Prof. Ian Korf's presentation at the Genome 10K workshop (May 25th, 2013). This talk mostly concerns the results of the Assemblathon 2 contest, but also covers other issues relating to genome assembly. Note, this talk has been superseded by updated versions (also available on slideshare)!]]> Thu, 25 Apr 2013 13:11:09 GMT /slideshow/assemblathon-2-talk/19974246 kbradnam@slideshare.net(kbradnam) Genome assembly: then and now — v1.0 kbradnam A talk that I gave to a a general audience at UC Davis. �ݺ�ߣs were also used for Prof. Ian Korf's presentation at the Genome 10K workshop (May 25th, 2013). This talk mostly concerns the results of the Assemblathon 2 contest, but also covers other issues relating to genome assembly. Note, this talk has been superseded by updated versions (also available on slideshare)! <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/assemblathon2talk-130425131109-phpapp02-thumbnail.jpg?width=120&height=120&fit=bounds" /> A talk that I gave to a a general audience at UC Davis. �ݺ�ߣs were also used for Prof. Ian Korf's presentation at the Genome 10K workshop (May 25th, 2013). This talk mostly concerns the results of the Assemblathon 2 contest, but also covers other issues relating to genome assembly. Note, this talk has been superseded by updated versions (also available on slideshare)!

Genome assembly: then and now — v1.0 from Keith Bradnam

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0 Polish that presentation! 25 tips to bring clarity to your slides /kbradnam/polish-that-presentation-25-tips-to-bring-clarity-to-your-slides polishthatpresentation25tipstobringingclaritytoyourslides-121026183602-phpapp02
There are many big things that you can do to improve your slides. There are also many small things that you could, and should, be doing. This presentation shows some tips for easily adding polish to your presentations.]]>
There are many big things that you can do to improve your slides. There are also many small things that you could, and should, be doing. This presentation shows some tips for easily adding polish to your presentations.]]> Fri, 26 Oct 2012 18:36:00 GMT /kbradnam/polish-that-presentation-25-tips-to-bring-clarity-to-your-slides kbradnam@slideshare.net(kbradnam) Polish that presentation! 25 tips to bring clarity to your slides kbradnam There are many big things that you can do to improve your slides. There are also many small things that you could, and should, be doing. This presentation shows some tips for easily adding polish to your presentations. <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/polishthatpresentation25tipstobringingclaritytoyourslides-121026183602-phpapp02-thumbnail.jpg?width=120&height=120&fit=bounds" /> There are many big things that you can do to improve your slides. There are also many small things that you could, and should, be doing. This presentation shows some tips for easily adding polish to your presentations.

Polish that presentation! 25 tips to bring clarity to your slides from Keith Bradnam

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0 10 tips for adding polish to presentations /slideshow/10-tips-for-adding-polish-to-presentations/13150927 2012-addingpolishtopresentations-10tips-120531123236-phpapp01
Too many presentations, especially in academia, fail because the audience leave without understanding or remembering what was said. In many cases, people make slides without fully understanding who the audience of the talk is, and/or what the key points of their talk should be. Here are some simple tips, gained from experience of many presentations at different levels, that will hopefully help you add some shine to your presentations.]]>
Too many presentations, especially in academia, fail because the audience leave without understanding or remembering what was said. In many cases, people make slides without fully understanding who the audience of the talk is, and/or what the key points of their talk should be. Here are some simple tips, gained from experience of many presentations at different levels, that will hopefully help you add some shine to your presentations.]]> Thu, 31 May 2012 12:32:33 GMT /slideshow/10-tips-for-adding-polish-to-presentations/13150927 kbradnam@slideshare.net(kbradnam) 10 tips for adding polish to presentations kbradnam Too many presentations, especially in academia, fail because the audience leave without understanding or remembering what was said. In many cases, people make slides without fully understanding who the audience of the talk is, and/or what the key points of their talk should be. Here are some simple tips, gained from experience of many presentations at different levels, that will hopefully help you add some shine to your presentations. <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/2012-addingpolishtopresentations-10tips-120531123236-phpapp01-thumbnail.jpg?width=120&height=120&fit=bounds" /> Too many presentations, especially in academia, fail because the audience leave without understanding or remembering what was said. In many cases, people make slides without fully understanding who the audience of the talk is, and/or what the key points of their talk should be. Here are some simple tips, gained from experience of many presentations at different levels, that will hopefully help you add some shine to your presentations.

10 tips for adding polish to presentations from Keith Bradnam

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0 Database talk for Bits & Bites meeting /slideshow/database-talk-for-bits-bites-meeting/12788090 bbdatabase04262012-120503111735-phpapp02
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]]> Thu, 03 May 2012 11:17:33 GMT /slideshow/database-talk-for-bits-bites-meeting/12788090 kbradnam@slideshare.net(kbradnam) Database talk for Bits & Bites meeting kbradnam <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/bbdatabase04262012-120503111735-phpapp02-thumbnail.jpg?width=120&height=120&fit=bounds" />

Database talk for Bits & Bites meeting from Keith Bradnam

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0 Benchmarking short-read mapping programs /slideshow/benchmarking-shortread-mapping-programs/12026593 finalbitsbites-120315191937-phpapp01
These slides were made by Stella Hartono, in the Korf Lab, UC Davis. For a rotation project in graduate school, she benchmarked the performance of various short-read mapping programs using simulated datasets. ]]>
These slides were made by Stella Hartono, in the Korf Lab, UC Davis. For a rotation project in graduate school, she benchmarked the performance of various short-read mapping programs using simulated datasets. ]]> Thu, 15 Mar 2012 19:19:36 GMT /slideshow/benchmarking-shortread-mapping-programs/12026593 kbradnam@slideshare.net(kbradnam) Benchmarking short-read mapping programs kbradnam These slides were made by Stella Hartono, in the Korf Lab, UC Davis. For a rotation project in graduate school, she benchmarked the performance of various short-read mapping programs using simulated datasets. <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/finalbitsbites-120315191937-phpapp01-thumbnail.jpg?width=120&height=120&fit=bounds" /> These slides were made by Stella Hartono, in the Korf Lab, UC Davis. For a rotation project in graduate school, she benchmarked the performance of various short-read mapping programs using simulated datasets.

Benchmarking short-read mapping programs from Keith Bradnam

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0 Thoughts on the recent announcements by Oxford Nanopore Technologies /slideshow/thoughts-on-the-recent-announcements-by-oxford-nanopore-technologies/11824223 bitsandbitesmeeting-120301181907-phpapp01
Some notes I made for the weekly UC Davis 'Bits & Bites' sequence analysis discussion club. This was a few days after the GridION and MinION technologies were announced at AGBT.]]>
Some notes I made for the weekly UC Davis 'Bits & Bites' sequence analysis discussion club. This was a few days after the GridION and MinION technologies were announced at AGBT.]]> Thu, 01 Mar 2012 18:19:04 GMT /slideshow/thoughts-on-the-recent-announcements-by-oxford-nanopore-technologies/11824223 kbradnam@slideshare.net(kbradnam) Thoughts on the recent announcements by Oxford Nanopore Technologies kbradnam Some notes I made for the weekly UC Davis 'Bits & Bites' sequence analysis discussion club. This was a few days after the GridION and MinION technologies were announced at AGBT. <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/bitsandbitesmeeting-120301181907-phpapp01-thumbnail.jpg?width=120&height=120&fit=bounds" /> Some notes I made for the weekly UC Davis 'Bits & Bites' sequence analysis discussion club. This was a few days after the GridION and MinION technologies were announced at AGBT.

Thoughts on the recent announcements by Oxford Nanopore Technologies from Keith Bradnam

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0 When is a genome finished? /slideshow/when-is-a-genome-finished/11165530 2012bitsbites-120119162151-phpapp02
A retrospective look at the state of many famous modern genome sequences, and a cautionary tale of the dangers in assuming that genome sequence and/or its annotations are finished.]]>
A retrospective look at the state of many famous modern genome sequences, and a cautionary tale of the dangers in assuming that genome sequence and/or its annotations are finished.]]> Thu, 19 Jan 2012 16:21:50 GMT /slideshow/when-is-a-genome-finished/11165530 kbradnam@slideshare.net(kbradnam) When is a genome finished? kbradnam A retrospective look at the state of many famous modern genome sequences, and a cautionary tale of the dangers in assuming that genome sequence and/or its annotations are finished. <img style="border:1px solid #C3E6D8;float:right;" alt="" src="https://cdn.slidesharecdn.com/ss_thumbnails/2012bitsbites-120119162151-phpapp02-thumbnail.jpg?width=120&height=120&fit=bounds" /> A retrospective look at the state of many famous modern genome sequences, and a cautionary tale of the dangers in assuming that genome sequence and/or its annotations are finished.

When is a genome finished? from Keith Bradnam

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0 https://cdn.slidesharecdn.com/profile-photo-kbradnam-48x48.jpg?cb=1548694290 I have worked in the field of bioinformatics since 1993 when I completed a Masters degree in Bioinformatics at the University of Manchester. Following this I went on to complete a PhD that focused on the evolution of genomes. I've sinced worked in various bioinformatics roles and increasingly find scientific outreach to be a core part of what I do. As of January 2016, I have formally switched to a full-time science communication position and work at the amazing Institute of Cancer Research in London, where I will be helping them grow and develop their digital communications strategies. Specialties: science communication, bioinformatics, genome analysis keithbradnam.com https://cdn.slidesharecdn.com/ss_thumbnails/13questionsyoumighthaveaboutgalaxy-150916044857-lva1-app6892-thumbnail.jpg?width=320&height=320&fit=bounds slideshow/13-questions-you-might-have-about-galaxy/52831472 13 questions you might... https://cdn.slidesharecdn.com/ss_thumbnails/genomeassembly-theartoftryingtomakeonebigthingfrommillionsofverysmallthingsv1-150622213539-lva1-app6891-thumbnail.jpg?width=320&height=320&fit=bounds slideshow/genome-assembly-the-art-of-trying-to-make-one-big-thing-from-millions-of-very-small-things-v11-with-notes/49707140 Genome assembly: the a... https://cdn.slidesharecdn.com/ss_thumbnails/thisbioinformaticslessonisbroughttoyoubytheletterw-withnotes-150622185352-lva1-app6892-thumbnail.jpg?width=320&height=320&fit=bounds slideshow/this-bioinformatics-lesson-is-brought-to-you-by-the-letter-w/49701124 This bioinformatics le...