This bioinformatics lesson is brought to you by the letter 'T'
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The document discusses various Unix text editors, highlighting their learning curves and features. It emphasizes the importance of developing command-line skills and mentions the usefulness of these skills over time in bioinformatics. Additionally, it promotes the efficiency gained from using tab-completion in command-line interfaces.
![Texteditorsupportforvariousoperatingsystems
416 Windows t 1OSX * Linu BSD * Unix 0penVMS*
Acme Yes Yes Yes Yes Yes No
AkelPad Yes N o N o N o N o N o
Mphatk Yes Yes Yes Yes Yes Yes
Aquamacs No Yes No N o No No
Yes Yes Partiailli No N oAtom
Arachnophilla Yes Y e s Yes Yes Yes N o
BBEdit No Y e s N o N o N o N o
Bluefish Yes1 Yes Yes Yes Yes Yes
Brackets Yes Yes Yes N o No No
Coda No Y e s No N o N o N o
ConTEXT Yes No No N o N o N o
CrimsonEditor Yes No N o N o N o N o
Diakonos Yes Y e s Y e s Yes Yes No
ed Yes Y e s Y e s Yes Yes Yes
EditPlus Yes N o No N o N o N o
Editra Yes Y e s Yes
EmEditor Yes N o N o N o N o No
epsilon Yes Y e s Y e s Y e s N o
Yes!Yes Yes Y e s Y e sGeany Yes Yes
gedit Yes Ye s [ 3 ] Ye s Y e s Y e s N o
GNUEmacs Yes Y e s Y e s Y e s Y e s Y e s
Gobby Yes Y e s Y e s Y e s Yes No
JED Yes Yes Y e s Y e s Yes Yes
'Edit Yes Yes Y e s Y e s Yes No
JOE Partialm Yes Yes Y e s Yes No
JOVE Yes Y e s Yes Yes Yes No
Kate Partial[5] Yes Yes Yes Yes No
KEDIT Yes No Yes Yes No No
Kod No Yes No No No No](https://image.slidesharecdn.com/thisbioinformaticslessonisbroughttoyoubythelettert-withnotes-150622185341-lva1-app6892/85/This-bioinformatics-lesson-is-brought-to-you-by-the-letter-T-7-320.jpg)
![Programmingfeatures[edit]
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Acme
AkelPad
Alphatk
Aquamacs
BBEdit
Bluefish
Brackets
Coda
ConTEXT
CrimsonEditor
Yes
Yes
Yes
Yes
Diakonos
Yes
ETextEditor
Yes
ed
Yes
EditPlus
Editra
EmEditor
No
Geany
No
Yes
Yes
Yes
Yes
Yes
Yes
Yes
Yes
Yes
Yes
Yes
Yes
gedit
Yes
GNUEmacs
Gobby
Yes
JED
jEdlt
JOE
Yes
JOVE
Kate
KEDIT 1M
Brace
matching
Auto
indentation
Yes
Yes
Yes
Yes
Yes
Yes
Yes
Yes
Yes
Plug-in
Yes
Yes
Yes
Yes
Yes
Yes
Yes
Yes
Yes
Yes
Yes
Yes
Yes
Yes
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Yes
Yes
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Yes
Yes
Yes
Yes
Yes
Yes
Yes
Yes
Yes
Yes
Yes
Yes
Yes
Yes
Yes
Yes Yeses
Syntax
ghlighting
No
Plug-in
Yes
Yes
Yes
Yes
Yes
Yes
Yes
Yes
Yes
Yes
No
Yes
Yes
Yes
Yes
Yes
Yes
Yes
Yes
Yes
Yes
No
Yes
Yes
Function
list
Yes
Plug-in
Yes
Yes
No
Yes
Yes
No
No
No
Yes
Plug-in
Plug-in
Texteditorsupportforprogrammingfeatures(seesourcecodeeditor)
Symbol
database
(ctagsorequiv.)
Yes
Yes
No
Yes
Partial(45)
Partial
M r N7.1
Pat a05)
Plug-in
Yes[49)
Plug-in
Yes
No
Yes
Yes
Plug-in
Macro
Yes
Yes
Yes
Yes
Yes
Yes
Yes
Yes
Yes
Yes
Auto
completion
Yes
Plug-in
Yes
E N o I
N o
Yes[471
Plug-in1481
Yes
Plug-in
Yes
No
Yes
Yes
N o I
Yes
N o
Code
folding
N o
Poug-n
Yes
Yes
Yes
Yes
Yes
Yes
No
No
N o
Yes
N o
Yes
Yes
Yes
Partial
No
Yes
N o
Yes
Yes
No
No
Yes
Yes
Text
folding
No
No
Yes
Yes
Yes
No
Yes
No
No INo
No
Yes
No
No
Yes
No
Plug-in(50
Yes
No
Yes
Yes
No
No
Yes
Yes
Compiler
Integration
Yes
Plug-in
Yes
Yes
Yes
Yes1441
Plug-in
No
Yes
Yes
No
Yes
No
Yes
Yes
Yes
Yes[51I
Yes
No
Yes
Plug-in
Yes
Yes
Plug-in
Yes](https://image.slidesharecdn.com/thisbioinformaticslessonisbroughttoyoubythelettert-withnotes-150622185341-lva1-app6892/85/This-bioinformatics-lesson-is-brought-to-you-by-the-letter-T-8-320.jpg)
This bioinformatics lesson is brought to you by the letter 'T'
- 1. Today's bioinformatics lesson is brought to you by the letter 'T' by Keith Bradnam Today'sbloinformatieslesson isbroughttoyoubytheletterT1
- 2. T is for Text editorsisforTexteditors
- 3. There are many Unix text editors!TherearemanyUnixtexteditors!
- 4. Editors Super powers Learning curve Nano None Shallow Emacs All of them Very steep Vi All of them Very steep Vim All of them Very steep Editors SuperpowersLearning curve Nano Emacs Ali Vim None Shallow Allofthem V e r y steep Allofthem V e r y steep Allofthem V e r y steep
- 5. These editors are available on every Unix system from the terminal Theseeditorsareavailableon everyUnixsystemfromtheterminal
- 7. Texteditorsupportforvariousoperatingsystems 416 Windows t 1OSX * Linu BSD * Unix 0penVMS* Acme Yes Yes Yes Yes Yes No AkelPad Yes N o N o N o N o N o Mphatk Yes Yes Yes Yes Yes Yes Aquamacs No Yes No N o No No Yes Yes Partiailli No N oAtom Arachnophilla Yes Y e s Yes Yes Yes N o BBEdit No Y e s N o N o N o N o Bluefish Yes1 Yes Yes Yes Yes Yes Brackets Yes Yes Yes N o No No Coda No Y e s No N o N o N o ConTEXT Yes No No N o N o N o CrimsonEditor Yes No N o N o N o N o Diakonos Yes Y e s Y e s Yes Yes No ed Yes Y e s Y e s Yes Yes Yes EditPlus Yes N o No N o N o N o Editra Yes Y e s Yes EmEditor Yes N o N o N o N o No epsilon Yes Y e s Y e s Y e s N o Yes!Yes Yes Y e s Y e sGeany Yes Yes gedit Yes Ye s [ 3 ] Ye s Y e s Y e s N o GNUEmacs Yes Y e s Y e s Y e s Y e s Y e s Gobby Yes Y e s Y e s Y e s Yes No JED Yes Yes Y e s Y e s Yes Yes 'Edit Yes Yes Y e s Y e s Yes No JOE Partialm Yes Yes Y e s Yes No JOVE Yes Y e s Yes Yes Yes No Kate Partial[5] Yes Yes Yes Yes No KEDIT Yes No Yes Yes No No Kod No Yes No No No No
- 8. Programmingfeatures[edit] , hi Acme AkelPad Alphatk Aquamacs BBEdit Bluefish Brackets Coda ConTEXT CrimsonEditor Yes Yes Yes Yes Diakonos Yes ETextEditor Yes ed Yes EditPlus Editra EmEditor No Geany No Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes gedit Yes GNUEmacs Gobby Yes JED jEdlt JOE Yes JOVE Kate KEDIT 1M Brace matching Auto indentation Yes Yes Yes Yes Yes Yes Yes Yes Yes Plug-in Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes No No Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yeses Syntax ghlighting No Plug-in Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes No Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes No Yes Yes Function list Yes Plug-in Yes Yes No Yes Yes No No No Yes Plug-in Plug-in Texteditorsupportforprogrammingfeatures(seesourcecodeeditor) Symbol database (ctagsorequiv.) Yes Yes No Yes Partial(45) Partial M r N7.1 Pat a05) Plug-in Yes[49) Plug-in Yes No Yes Yes Plug-in Macro Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Auto completion Yes Plug-in Yes E N o I N o Yes[471 Plug-in1481 Yes Plug-in Yes No Yes Yes N o I Yes N o Code folding N o Poug-n Yes Yes Yes Yes Yes Yes No No N o Yes N o Yes Yes Yes Partial No Yes N o Yes Yes No No Yes Yes Text folding No No Yes Yes Yes No Yes No No INo No Yes No No Yes No Plug-in(50 Yes No Yes Yes No No Yes Yes Compiler Integration Yes Plug-in Yes Yes Yes Yes1441 Plug-in No Yes Yes No Yes No Yes Yes Yes Yes[51I Yes No Yes Plug-in Yes Yes Plug-in Yes
- 11. It takes time to learn command-line skillsIttakestimetolearncommandlineskills
- 12. But those skills will always remain useful!Butthoseskillswillalwaysremainuseful!
- 13. Future usefulness of various skills Windows 10 skills Bioinformatics programs Unix commands Today 1 year from now 5 years from now ? 10 years from now X ? 20 years from now X X Futureusefulnessofvariousskills Windows10 skills Bloinformatics U n i x programscommands Today 1yearfromnow 5yearsfromnow 10yearsfromnow 20yearsfromnow t t t X ? i f
- 16. esc 0,0 1 1 2 option w1 I:230 17:7 3 F ≒≒≒≒ command ODD ODDF4 4 5 A 6 & 7 44 8 )11 1 9 ≒≒: :ommand option ril 1 4))) F12 A delete
- 17. Tab-completion is your friendTab-completionisyourfriend
- 18. Tab-completion will probably save you more time than anything else you will learn Tab-completionwillprobablysaveyoumore timethananythingelseyouwilllearn
- 19. The endTheend