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#VIVOifest15
Karma data integration:
creating semantic web
compliant VIVO data
Violeta Ilik @violetailik
Galter Health Sciences Library
Feinberg School of Medicine
Northwestern University Clinical and
Translational Sciences Institute (NUCATS), Chicago, IL
https://galter.northwestern.edu/staff/Violeta-Ilik
http://vivo.vivoweb.org/display/n10603
#VIVOifest15
Outline:
≒ Examine your data
≒ Clean your data
≒ Create local ontology extensions (optional)
≒ Model your data
≒ Load your data
Violeta Ilik @violetailik
#VIVOifest15
Examine your data
Accommodate within existing ontologies most of your
data
Opt for local extensions if necessary
≒ Local unique identifiers (people & organizations)
≒ Specific needs (publication types; non-traditional
scholarly outputs )
Violeta Ilik @violetailik
#VIVOifest15
Clean your data
≒ Utilizing local resources and skills
polyglot programing skills (Python, Perl,
XSLT, SAS, R, OpenRefine)
Violeta Ilik @violetailik
#VIVOifest15
Ontology: VIVO core
Violeta Ilik @violetailik
#VIVOifest15
VIVO local ontology extensions
Violeta Ilik @violetailik
#VIVOifest15
Modeling organizations/units data
Violeta Ilik @violetailik
#VIVOifest15
Modeling organizations/units data
Violeta Ilik @violetailik
#VIVOifest15
Modeling person data
Violeta Ilik @violetailik
#VIVOifest15
Modeling person data
Violeta Ilik @violetailik
#VIVOifest15
Modeling persons positions data
Violeta Ilik @violetailik
#VIVOifest15
Modeling persons positions data
Violeta Ilik @violetailik
#VIVOifest15
Modeling publications data 
academic articles
Violeta Ilik @violetailik
#VIVOifest15
Modeling publications data 
comparative study
Violeta Ilik @violetailik
#VIVOifest15
References:
≒ https://github.com/vioil/ontology_extensions
≒ https://github.com/vioil/R2RML-Karma
≒https://www.youtube.com/channel/
UCb9vsw2XvZDzZtEwe0aH9eA
≒ http://www.isi.edu/integration/karma/
Violeta Ilik @violetailik
#VIVOifest15
Discussion
Thank you
Violeta Ilik
Violeta Ilik @violetailik

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Karma Data Modeling