Presentation for blast algorithm bio-informaticezahid6
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Presentation for BLAST algorithm
Publisher Md.Zahid Hasan
Bio-informatics blast is the use of computational tools for the process of acquisition, visualization, analysis and distribution of these datasets obtained by imaging modalities.
A review of two alignment-free methods for sequence comparison. In this presentation two alignment-free methods are studied:
- "Similarity analysis of DNA sequences based on LZ complexity and dynamic programming algorithm" by Guo et al.
- "Alignment-free comparison of genome sequences by a new numerical characterization" by Huang et al.
This document summarizes research analyzing the statistical randomness of SHA3-256 hash algorithm output. Researchers adapted 5 of the 15 NIST Statistical Testing Suite (STS) tests to analyze massive datasets of 996 million to 101 billion SHA3-256 hashes. Four tests showed no evidence against randomness, but the longest runs test did show some evidence against it. Overall the results suggest SHA3-256 appears random and suitable as a cryptographic hash function, but more research is needed, especially validating the longest runs test on larger datasets and assessing the spectral test. Scaling statistical tests to "big data" sizes is an important area for further cryptanalysis research.
B.sc biochem i bobi u 3.2 algorithm + blastRai University
?
The Needleman-Wunsch algorithm is a dynamic programming algorithm used to align biological sequences like protein or DNA. It was developed in 1970 by Needleman and Wunsch and is still widely used for optimal global sequence alignment. The algorithm divides a sequence alignment problem into smaller subproblems and combines their solutions to find the optimal global alignment.
ICDE-2015 Shortest Path Traversal Optimization and Analysis for Large Graph C...Waqas Nawaz
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Waqas Nawaz Khokhar presented research on optimizing shortest path traversal and analysis for large graph clustering. The presentation outlined challenges with traditional graph clustering approaches for big real-world graphs. It proposed four optimizations: 1) a collaborative similarity measure to reduce complexity from O(n3) to O(n2logn); 2) identifying overlapping shortest path regions to avoid redundant traversals; 3) confining traversals within clusters to limit unnecessary graph regions; and 4) allowing parallel shortest path queries to reduce latency. Experimental results on real and synthetic graphs showed the approaches improved efficiency by 40% in time and an order of magnitude in space while maintaining clustering quality. Future work aims to address intermediate data explosion
Feature Selection for Document RankingAndrea Gigli
?
Feature selection for Machine Learning applied to Document Ranking (aka L2R, LtR, LETOR). Contains empirical results on Yahoo! and Bing public available Web Search Engine data.
A report on designing a model for improving CPU Scheduling by using Machine L...MuskanRath1
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Disclaimer: Please let me know in case some of the portions of the article match your research. I would include the link to your research in the description section of my article.
Description:
The main concern of our paper describes that we are proposing a model for a uniprocessor system for improving CPU scheduling. Our model is implemented at low-level language or assembly language and LINUX is used for the implementation of the model as it is an open-source environment and its kernel is editable.
There are several methods to predict the length of the CPU bursts, such as the exponential averaging method, however, these methods may not give accurate or reliable predicted values. In this paper, we will propose a Machine Learning (ML) based on the best approach to estimate the length of the CPU bursts for processes. We will make use of Bayesian Theory for our model as a classifier tool that will decide which process will execute first in the ready queue. The proposed approach aims to select the most significant attributes of the process using feature selection techniques and then predicts the CPU-burst for the process in the grid. Furthermore, applying attribute selection techniques improves the performance in terms of space, time, and estimation.
An Automatic Clustering Technique for Optimal ClustersIJCSEA Journal
?
This document presents a new automatic clustering algorithm called Automatic Merging for Optimal Clusters (AMOC). AMOC is a two-phase iterative extension of k-means clustering that aims to automatically determine the optimal number of clusters for a given dataset. In the first phase, AMOC initializes a large number of clusters k using k-means. In the second phase, it iteratively merges the lowest probability cluster with its closest neighbor, recomputing metrics each time to evaluate if the merge improved clustering quality. The algorithm stops merging once no improvements are found. Experimental results on synthetic and real datasets show AMOC finds nearly optimal cluster structures in terms of number, compactness and separation of clusters.
The document discusses black-box behavioral model inference for automated systems like autopilots. It proposes using a hybrid deep neural network to infer internal states and detect state changes of black-box systems from input/output data. Experiments on two datasets show the approach outperforms baselines at detecting state changes and predicting internal states, with improvements of 88-102% and up to 19% respectively. The approach was replicated successfully on another system and autopilot data, confirming its feasibility.
This document discusses using probabilistic models to optimize multi-robot systems. It describes modeling system behavior, extracting parameters, and using models to find optimal control parameters and system designs. Optimization aims to maximize metrics like speed, reliability and user benefits while minimizing cost and size. The document presents examples of optimizing a coverage task by finding optimal waiting times between robot inspections using analytical models. It also discusses estimating model and control parameters simultaneously from experimental data.
Approaches to online quantile estimationData Con LA
?
Data Con LA 2020
Description
This talk will explore and compare several compact data structures for estimation of quantiles on streams, including a discussion of how they balance accuracy against computational resource efficiency. A new approach providing more flexibility in specifying how computational resources should be expended across the distribution will also be explained. Quantiles (e.g., median, 99th percentile) are fundamental summary statistics of one-dimensional distributions. They are particularly important for SLA-type calculations and characterizing latency distributions, but unlike their simpler counterparts such as the mean and standard deviation, their computation is somewhat more expensive. The increasing importance of stream processing (in observability and other domains) and the impossibility of exact online quantile calculation together motivate the construction of compact data structures for estimation of quantiles on streams. In this talk we will explore and compare several such data structures (e.g., moment-based, KLL sketch, t-digest) with an eye towards how they balance accuracy against resource efficiency, theoretical guarantees, and desirable properties such as mergeability. We will also discuss a recent variation of the t-digest which provides more flexibility in specifying how computational resources should be expended across the distribution. No prior knowledge of the subject is assumed. Some familiarity with the general problem area would be helpful but is not required.
Speaker
Joe Ross, Splunk, Principal Data Scientist
This document summarizes Amin Dastanpour's research comparing the use of genetic algorithms to optimize artificial neural networks and support vector machines for intrusion detection systems. The research aims to improve detection rates using machine learning algorithms with fewer features. It applies genetic algorithms to select optimal features for neural networks and support vector machines, achieving 100% detection rates using only 18 features for neural networks and 24 features for support vector machines. This outperforms other algorithms from related work and demonstrates the effectiveness of genetic algorithms for optimization.
- Dynamic programming is used to find the optimal alignment between two protein sequences by recursively computing sub-alignments and storing them in a lookup table.
- The example shows calculating the alignment score between a zinc-finger core sequence and a viral sequence fragment by filling a table and tracking the cumulative scores.
- Filling the table from left to right and top to bottom allows reconstructing the highest scoring alignment between the two sequences.
Bioinformatics emerged from the marriage of computer science and molecular biology to analyze massive amounts of biological data, like that produced by the Human Genome Project. It uses algorithms and techniques from computer science to solve problems in molecular biology, like comparing genomic sequences to understand evolution. As genomic data exploded publicly, bioinformatics was needed to efficiently store, analyze, and make sense of this information, which has applications in molecular medicine, drug development, agriculture, and more.
The document describes an algorithm for pairwise sequence alignment using dynamic programming. It provides an example of applying the algorithm to find the optimal alignment between a zinc-finger protein sequence and a viral protein sequence fragment. The algorithm works by building up the optimal alignment score matrix from left to right and top to bottom, tracking the maximum score at each point to recursively build up to the final alignment.
The document discusses updates to the human reference genome assembly GRCh38. It provides background on reference assemblies and describes how the Genome Reference Consortium manages and models genome assemblies. Key points include that GRCh38 contains refined centromere regions based on new data, novel sequence detections, and 261 alternate loci representing structural variants. The assembly is now incorporated into public sequence databases to improve access and use of the reference genome data.
Two methods are described for optimizing cognitive model parameters: differential evolution (DE) and high-throughput computing with HTCondor. DE is a genetic algorithm that uses a population of models to explore the parameter space in parallel. It is well-suited for models with few parameters or short run times. HTCondor allows running a population of models over a computer network, making it suitable for larger, more complex models or simulating many participants. Examples of using each method with an ACT-R paired associate model are provided.
Computational Approaches to Systems BiologyMike Hucka
?
Presentation given at the Sydney Computational Biologists meetup on 21 August 2013 (http://australianbioinformatics.net/past-events/2013/8/21/computational-approaches-to-systems-biology.html).
The document discusses various research projects involving the automated design and optimization of complex physical, chemical, and biological systems using evolutionary algorithms and machine learning techniques. It describes current and planned usage of computer clusters to run simulations and experiments for protein structure prediction, software self-assembly, and modeling physico-chemical systems through evolutionary optimization of parameters. The research requires significant computational resources to process large datasets and evaluate models in parallel.
The document provides an overview of machine learning concepts and applications in bioinformatics. It discusses key topics like supervised vs unsupervised learning, classification vs regression, linear vs non-linear models, and examples of machine learning algorithms like naive Bayes, neural networks, and support vector machines. Specific examples mentioned include using these algorithms for protein function prediction, gene finding, and predicting RNA binding sites in proteins.
The document summarizes several bio-inspired algorithms including CLONALG, aiNet, ABNET, and Opt-aiNet. CLONALG is a clonal selection algorithm inspired by immune system principles of clonal selection, hypermutation, and affinity maturation. aiNet is an artificial immune network model that uses principles of clonal selection, affinity maturation, and network suppression to perform unsupervised learning and clustering. ABNET is an antibody network based on a feedforward neural network trained with immune system concepts. Opt-aiNet adapts the aiNet model for optimization problems by introducing dynamic population sizing, mutation proportional to fitness, and automatic stopping criteria.
Cost Optimized Design Technique for Pseudo-Random Numbers in Cellular Automataijait
?
In this research work, we have put an emphasis on the cost effective design approach for high quality pseudo-random numbers using one dimensional Cellular Automata (CA) over Maximum Length CA. This work focuses on different complexities e.g., space complexity, time complexity, design complexity and searching complexity for the generation of pseudo-random numbers in CA. The optimization procedure for
these associated complexities is commonly referred as the cost effective generation approach for pseudorandom numbers. The mathematical approach for proposed methodology over the existing maximum length CA emphasizes on better flexibility to fault coverage. The randomness quality of the generated patterns for the proposed methodology has been verified using Diehard Tests which reflects that the randomness quality
achieved for proposed methodology is equal to the quality of randomness of the patterns generated by the maximum length cellular automata. The cost effectiveness results a cheap hardware implementation for the concerned pseudo-random pattern generator. Short version of this paper has been published in [1].
International Journal on Cryptography and Information Security (IJCIS)ijcisjournal
?
Abstract
In this work, we present a universal whitening algorithm using n-qubit permutation matrices to
remove the imperfections in commercial random number generators without compression. Specifically, we demonstrate the efficacy of our algorithm in several categories of random number generators
and its comparison with cryptographic hash functions and block ciphers.
Josh Patterson, Principal at Patterson Consulting: Introduction to Parallel Iterative Machine Learning Algorithms on Hadoop¡¯s Next?Generation YARN Framework
Proteins. 2013 Nov;81(11):1885-99. doi: 10.1002/prot.24330. Epub 2013 Aug 16.
DNABind: A hybrid algorithm for structure-based prediction of DNA-binding residues by combining machine learning- and template-based approaches.
Liu R, Hu J.
IMPLEMENTATION OF MACHINE LEARNING IN E-COMMERCE & BEYONDRabi Das
?
Presentation for the webinar held on 23rd May 2020, conducted by The IoT Academy for FDP program in collaboration with E&ICT Avademy, IIT Guwahati and delivered by Mr. Shree Kant Das, Growth and Digital Strategy Manager from noon.com.
The document summarizes machine learning applications in performance management, including transaction recognition, event mining, and probing strategy. It discusses using naive Bayes classification to recognize end-user transactions from remote procedure calls, representing transactions as feature vectors of RPC counts. Evaluation showed the approach achieved up to 87% accuracy for classification and 64% accuracy for combined segmentation and labeling. Event mining aims to learn system behavior patterns from large event logs, using probabilistic graphical models. Probing strategy seeks an optimal probe frequency to minimize failure detection time while limiting additional load.
The AMPLab at UC Berkeley was launched in 2011 with 6-year funding from the NSF and DARPA to do research at the intersection of machine learning, large-scale distributed systems, and data management. It has around 65 students, faculty and staff working on these topics. Some of its key projects include Apache Spark and other open-source big data tools. The lab aims to build a unified platform for analytics that can handle different types of algorithms and data at large scale. It also runs training programs like AMPCamp to disseminate its research.
Apache Spark is a fast and general cluster computing system that improves efficiency through in-memory computing and usability through rich APIs. Spark SQL provides a way to work with structured data and transform RDDs using SQL. It can read data from sources like Parquet and JSON files, Hive, and write query results to Parquet for efficient querying. Spark SQL also allows machine learning pipelines to be built by connecting SQL queries to MLlib algorithms.
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The document discusses black-box behavioral model inference for automated systems like autopilots. It proposes using a hybrid deep neural network to infer internal states and detect state changes of black-box systems from input/output data. Experiments on two datasets show the approach outperforms baselines at detecting state changes and predicting internal states, with improvements of 88-102% and up to 19% respectively. The approach was replicated successfully on another system and autopilot data, confirming its feasibility.
This document discusses using probabilistic models to optimize multi-robot systems. It describes modeling system behavior, extracting parameters, and using models to find optimal control parameters and system designs. Optimization aims to maximize metrics like speed, reliability and user benefits while minimizing cost and size. The document presents examples of optimizing a coverage task by finding optimal waiting times between robot inspections using analytical models. It also discusses estimating model and control parameters simultaneously from experimental data.
Approaches to online quantile estimationData Con LA
?
Data Con LA 2020
Description
This talk will explore and compare several compact data structures for estimation of quantiles on streams, including a discussion of how they balance accuracy against computational resource efficiency. A new approach providing more flexibility in specifying how computational resources should be expended across the distribution will also be explained. Quantiles (e.g., median, 99th percentile) are fundamental summary statistics of one-dimensional distributions. They are particularly important for SLA-type calculations and characterizing latency distributions, but unlike their simpler counterparts such as the mean and standard deviation, their computation is somewhat more expensive. The increasing importance of stream processing (in observability and other domains) and the impossibility of exact online quantile calculation together motivate the construction of compact data structures for estimation of quantiles on streams. In this talk we will explore and compare several such data structures (e.g., moment-based, KLL sketch, t-digest) with an eye towards how they balance accuracy against resource efficiency, theoretical guarantees, and desirable properties such as mergeability. We will also discuss a recent variation of the t-digest which provides more flexibility in specifying how computational resources should be expended across the distribution. No prior knowledge of the subject is assumed. Some familiarity with the general problem area would be helpful but is not required.
Speaker
Joe Ross, Splunk, Principal Data Scientist
This document summarizes Amin Dastanpour's research comparing the use of genetic algorithms to optimize artificial neural networks and support vector machines for intrusion detection systems. The research aims to improve detection rates using machine learning algorithms with fewer features. It applies genetic algorithms to select optimal features for neural networks and support vector machines, achieving 100% detection rates using only 18 features for neural networks and 24 features for support vector machines. This outperforms other algorithms from related work and demonstrates the effectiveness of genetic algorithms for optimization.
- Dynamic programming is used to find the optimal alignment between two protein sequences by recursively computing sub-alignments and storing them in a lookup table.
- The example shows calculating the alignment score between a zinc-finger core sequence and a viral sequence fragment by filling a table and tracking the cumulative scores.
- Filling the table from left to right and top to bottom allows reconstructing the highest scoring alignment between the two sequences.
Bioinformatics emerged from the marriage of computer science and molecular biology to analyze massive amounts of biological data, like that produced by the Human Genome Project. It uses algorithms and techniques from computer science to solve problems in molecular biology, like comparing genomic sequences to understand evolution. As genomic data exploded publicly, bioinformatics was needed to efficiently store, analyze, and make sense of this information, which has applications in molecular medicine, drug development, agriculture, and more.
The document describes an algorithm for pairwise sequence alignment using dynamic programming. It provides an example of applying the algorithm to find the optimal alignment between a zinc-finger protein sequence and a viral protein sequence fragment. The algorithm works by building up the optimal alignment score matrix from left to right and top to bottom, tracking the maximum score at each point to recursively build up to the final alignment.
The document discusses updates to the human reference genome assembly GRCh38. It provides background on reference assemblies and describes how the Genome Reference Consortium manages and models genome assemblies. Key points include that GRCh38 contains refined centromere regions based on new data, novel sequence detections, and 261 alternate loci representing structural variants. The assembly is now incorporated into public sequence databases to improve access and use of the reference genome data.
Two methods are described for optimizing cognitive model parameters: differential evolution (DE) and high-throughput computing with HTCondor. DE is a genetic algorithm that uses a population of models to explore the parameter space in parallel. It is well-suited for models with few parameters or short run times. HTCondor allows running a population of models over a computer network, making it suitable for larger, more complex models or simulating many participants. Examples of using each method with an ACT-R paired associate model are provided.
Computational Approaches to Systems BiologyMike Hucka
?
Presentation given at the Sydney Computational Biologists meetup on 21 August 2013 (http://australianbioinformatics.net/past-events/2013/8/21/computational-approaches-to-systems-biology.html).
The document discusses various research projects involving the automated design and optimization of complex physical, chemical, and biological systems using evolutionary algorithms and machine learning techniques. It describes current and planned usage of computer clusters to run simulations and experiments for protein structure prediction, software self-assembly, and modeling physico-chemical systems through evolutionary optimization of parameters. The research requires significant computational resources to process large datasets and evaluate models in parallel.
The document provides an overview of machine learning concepts and applications in bioinformatics. It discusses key topics like supervised vs unsupervised learning, classification vs regression, linear vs non-linear models, and examples of machine learning algorithms like naive Bayes, neural networks, and support vector machines. Specific examples mentioned include using these algorithms for protein function prediction, gene finding, and predicting RNA binding sites in proteins.
The document summarizes several bio-inspired algorithms including CLONALG, aiNet, ABNET, and Opt-aiNet. CLONALG is a clonal selection algorithm inspired by immune system principles of clonal selection, hypermutation, and affinity maturation. aiNet is an artificial immune network model that uses principles of clonal selection, affinity maturation, and network suppression to perform unsupervised learning and clustering. ABNET is an antibody network based on a feedforward neural network trained with immune system concepts. Opt-aiNet adapts the aiNet model for optimization problems by introducing dynamic population sizing, mutation proportional to fitness, and automatic stopping criteria.
Cost Optimized Design Technique for Pseudo-Random Numbers in Cellular Automataijait
?
In this research work, we have put an emphasis on the cost effective design approach for high quality pseudo-random numbers using one dimensional Cellular Automata (CA) over Maximum Length CA. This work focuses on different complexities e.g., space complexity, time complexity, design complexity and searching complexity for the generation of pseudo-random numbers in CA. The optimization procedure for
these associated complexities is commonly referred as the cost effective generation approach for pseudorandom numbers. The mathematical approach for proposed methodology over the existing maximum length CA emphasizes on better flexibility to fault coverage. The randomness quality of the generated patterns for the proposed methodology has been verified using Diehard Tests which reflects that the randomness quality
achieved for proposed methodology is equal to the quality of randomness of the patterns generated by the maximum length cellular automata. The cost effectiveness results a cheap hardware implementation for the concerned pseudo-random pattern generator. Short version of this paper has been published in [1].
International Journal on Cryptography and Information Security (IJCIS)ijcisjournal
?
Abstract
In this work, we present a universal whitening algorithm using n-qubit permutation matrices to
remove the imperfections in commercial random number generators without compression. Specifically, we demonstrate the efficacy of our algorithm in several categories of random number generators
and its comparison with cryptographic hash functions and block ciphers.
Josh Patterson, Principal at Patterson Consulting: Introduction to Parallel Iterative Machine Learning Algorithms on Hadoop¡¯s Next?Generation YARN Framework
Proteins. 2013 Nov;81(11):1885-99. doi: 10.1002/prot.24330. Epub 2013 Aug 16.
DNABind: A hybrid algorithm for structure-based prediction of DNA-binding residues by combining machine learning- and template-based approaches.
Liu R, Hu J.
IMPLEMENTATION OF MACHINE LEARNING IN E-COMMERCE & BEYONDRabi Das
?
Presentation for the webinar held on 23rd May 2020, conducted by The IoT Academy for FDP program in collaboration with E&ICT Avademy, IIT Guwahati and delivered by Mr. Shree Kant Das, Growth and Digital Strategy Manager from noon.com.
The document summarizes machine learning applications in performance management, including transaction recognition, event mining, and probing strategy. It discusses using naive Bayes classification to recognize end-user transactions from remote procedure calls, representing transactions as feature vectors of RPC counts. Evaluation showed the approach achieved up to 87% accuracy for classification and 64% accuracy for combined segmentation and labeling. Event mining aims to learn system behavior patterns from large event logs, using probabilistic graphical models. Probing strategy seeks an optimal probe frequency to minimize failure detection time while limiting additional load.
The AMPLab at UC Berkeley was launched in 2011 with 6-year funding from the NSF and DARPA to do research at the intersection of machine learning, large-scale distributed systems, and data management. It has around 65 students, faculty and staff working on these topics. Some of its key projects include Apache Spark and other open-source big data tools. The lab aims to build a unified platform for analytics that can handle different types of algorithms and data at large scale. It also runs training programs like AMPCamp to disseminate its research.
Apache Spark is a fast and general cluster computing system that improves efficiency through in-memory computing and usability through rich APIs. Spark SQL provides a way to work with structured data and transform RDDs using SQL. It can read data from sources like Parquet and JSON files, Hive, and write query results to Parquet for efficient querying. Spark SQL also allows machine learning pipelines to be built by connecting SQL queries to MLlib algorithms.
This document summarizes the history and ongoing development of MLlib, Spark's machine learning library. MLlib was initially developed by the MLbase team in 2013 and has since grown significantly with over 80 contributors. It provides algorithms for classification, regression, clustering, collaborative filtering, and linear algebra/optimization. Recent improvements include new algorithms like random forests, pipelines for simplified ML workflows, and continued performance gains.
SparkR: Enabling Interactive Data Science at Scalejeykottalam
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The document discusses SparkR, which enables interactive data science using R on Apache Spark clusters. SparkR allows users to create and manipulate resilient distributed datasets (RDDs) from R and run R analytics functions in parallel on large datasets. It provides examples of using SparkR for tasks like word counting on text data and digit classification using the MNIST dataset. The API is designed to be similar to PySpark for ease of use.
This document discusses machine learning pipelines and introduces Evan Sparks' presentation on building image classification pipelines. It provides an overview of feature extraction techniques used in computer vision like normalization, patch extraction, convolution, rectification and pooling. These techniques are used to transform images into feature vectors that can be input to linear classifiers. The document encourages building simple, intermediate and advanced image classification pipelines using these techniques to qualitatively and quantitatively compare their effectiveness.
This document summarizes the CoCoA algorithm for distributed optimization. CoCoA uses a primal-dual framework to solve machine learning problems efficiently when data is distributed across multiple machines. It allows local machines to immediately apply updates to their local dual variables, while averaging the local primal updates over a small number of machines. CoCoA guarantees convergence, requires low communication, and can be implemented in just a few lines of code in systems like Spark. It improves upon mini-batch approaches by handling methods beyond stochastic gradient descent and avoiding issues with stale updates.
The Evolution of Microsoft Project Portfolio ManagementOnePlan Solutions
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Project portfolio management has come a long way but many PMOs are still stuck using static plans, siloed tools, and processes that don¡¯t reflect how work actually gets done today. As business priorities shift faster and teams grow more dispersed, PMOs must evolve from project trackers to strategic enablers. That means leading with visibility, agility, and real-time insight, not just governance.
In this webinar, we¡¯ll take a closer look at how Microsoft Project Portfolio Management is evolving and how the most effective PMOs are adapting. You¡¯ll see how OnePlan helps bring strategy and execution together in Microsoft 365, giving you a more connected, modern approach to managing portfolios.
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Optimize contract management with AI! In this guide, we explore the 6 best AI tools to automate processes, reduce risks, and boost business efficiency. Discover how modern technology can simplify contract handling!
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Cypress Parallel Testing Tutorial: Speed Up Your Test Runs with EaseShubham Joshi
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Parallel testing with Cypress can dramatically reduce test execution time and accelerate your CI/CD pipeline. This tutorial walks you through setting up parallel execution using the Cypress Dashboard or third-party CI tools like GitHub Actions and CircleCI. Includes practical code examples to help you get started quickly.
When developing an eCommerce app, careful consideration of the development cost is essential to ensure a successful project.
The total cost of developing an eCommerce app depends on various elements such as the app's complexity, the platform (iOS, Android, or cross-platform), user experience (UX) and interface design (UI), and even the location of your development team.
Creating an eCommerce app goes beyond simply setting up an online store; it¡¯s about selecting the right features that meet your business goals. Each decision, from feature selection to ongoing maintenance, impacts the overall cost.
Investing in the right development team is essential. A high-quality app can boost customer engagement, increase sales, and provide direct marketing channels. Whether you¡¯re building a basic or complex app, it¡¯s essential to have a clear understanding of your budget, requirements and desired outcomes upfront.
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The slides of my presentation in Utrecht, Nederlands, at the 29th of march.
It is a high-level presentation of our mORMot 2 Open Source toolbox, in modern object pascal, for both Delphi and FPC/Lazarus.
It tries to demystify some of the main misunderstanding about Object Pascal or our Open Source framework.
EMEA Virtual Marketo User Group - Adobe Summit 2025 Round UpBradBedford3
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1. Concurrency Control for
Parallel Machine Learning
Dimitris Papailiopoulos
Xinghao Pan, Joseph Gonzalez, Stefanie Jegelka, Tamara Broderick, Dimitris Papailiopoulos, Joseph
Bradley, Michael I. Jordan
8. Correctness
Concurrency
Coordination-free
Serial
High
Low High
Low
Concurrency
Control
Database mechanisms
o Guarantee correctness
o Maximize concurrency
? Mutual exclusion
? Optimistic CC
9. Model
State
Data
Mutual Exclusion Through
Locking
Processor 1
Processor 2
Introduce locking (scheduling) protocols to prevent
conflicts.
10. Mutual Exclusion Through
Model
State
Data
Processor 1
Processor 2
Locking
?
Enforce local serialization to avoid conflicts.
11. Optimistic Concurrency Control
Model
State
Data
Processor 1
Processor 2
Allow computation to proceed without blocking.
Kung & Robinson. On optimistic methods for concurrency
control.
12. Optimistic Concurrency Control
Model
State
Data
Invalid Outcome
? ?
Processor 1
Processor 2
Validate potential conflicts.
Kung & Robinson. On optimistic methods for concurrency
control.
13. Optimistic Concurrency Control
Model
State
Data
? ?
Processor 1
Processor 2
Rollback and Redo
Take a compensating action.
Kung & Robinson. On optimistic methods for concurrency
control.
14. Concurrency Control
14
Coordination Free:
Provably fast and correct under key assumptions.
Concurrency Control:
Provably correct and fast under key assumptions.
Systems Ideas to
Improve Efficiency
15. Machine Learning + Concurrency
Clusteri
ng
Online
Facility
Location
Control
(Xinghao Pan et al.)
Submodular
Maximization
Subset selection, diminishing
marginal gains
Max Graph
Cut
Set
Cover
Sensor Placement
Social Network
Influence
Propagation
Document
Summarization
Sports
Football
Word Series
Giants
Cardinals
Politics
Midterm
Obama
Democrat
Tea
Finance
QE
market
interest
Dow
Topic Modelling
Correlation
Clustering
Deduplication
Community
Detection
16. Machine Learning + Concurrency
Clusteri
ng
Online
Facility
Location
Control
(Xinghao Pan et al.)
Submodular
Maximization
Subset selection, diminishing
marginal gains
Max Graph
Cut
Set
Cover
Sensor Placement
Social Network
Influence
Propagation
Document
Summarization
Sports
Football
Word Series
Giants
Cardinals
Politics
Midterm
Obama
Democrat
Tea
Finance
QE
market
interest
Dow
Topic Modelling
Correlation
Clustering
Deduplication
Community
Detection
Serial ML
algorithm
Sequence of
transactions
Identify potential
conflicts
Apply Concurrency
Control
mechanisms
Parallel ML
algorithm
17. Application: Deduplication
Computer Science
Division ¨C University of
California Berkeley CA
University of California at Berkeley
Department of
Physics Stanford
University California
Lawrence Berkeley National
Labs <ref>California</ref>
19. Serial Correlation Clustering
Nir Ailon, Moses Charikar, and Alantha Newman.
Aggregating inconsistent information: ranking and clustering.
Journal of the ACM (JACM), 55(5):23, 2008.
Serially process vertices
20. Serial Correlation Clustering
Nir Ailon, Moses Charikar, and Alantha Newman.
Aggregating inconsistent information: ranking and clustering.
Journal of the ACM (JACM), 55(5):23, 2008.
Serially process vertices
21. Serial Correlation Clustering
Nir Ailon, Moses Charikar, and Alantha Newman.
Aggregating inconsistent information: ranking and clustering.
Journal of the ACM (JACM), 55(5):23, 2008.
Serially process vertices
22. Serial Correlation Clustering
Nir Ailon, Moses Charikar, and Alantha Newman.
Aggregating inconsistent information: ranking and clustering.
Journal of the ACM (JACM), 55(5):23, 2008.
Serially process vertices
23. Serial Correlation Clustering
Nir Ailon, Moses Charikar, and Alantha Newman.
Aggregating inconsistent information: ranking and clustering.
Journal of the ACM (JACM), 55(5):23, 2008.
Serially process vertices
Approximation 3 OPT (in expectation)
25. Concurrency Control Correlation Clustering
(C4) Parallel Correlation Clustering
Cannot Resolve introduce
by
Mutual adjacent Exclusion
cluster
centers
26. Concurrency Control Correlation Clustering
(C4)
Common Resolve neighbor by
must be
assigned Optimistic to Concurrency
earliest center
Control
?
Optimistic Assumption
No other new cluster created
Resolution
Assign common neighbor to earliest cluster
27. Properties of C4
(Concurrency Control Correlation Clustering)
Theorem: C4 is correct.
C4 preserves same guarantees as serial algorithm (3
OPT).
Concurren Correctness
Theorem: C4 has provably small overheads.
cy
= almost linear speedup
Expected #blocked transactions < 2¦Ó |E| / |V|.
¦Ó ¡Ô diff in parallel cpu¡¯s progress
28. Empirical Validation on Billion Edge
Graphs
Amazon EC2 r3.8xlarge instances
Multicore up to 16 threads
Real and synthetic graphs
100 runs (10 random orderings x 10 runs)
Graph Vertices Edges
IT-2004 Italian web-graph 41 Million 1.14 Billion
Webbase-2001 WebBase crawl 118 Million 1.02 Billion
Erdos-Renyi Synthetic random 100 Million ¡Ö 1.0 Billion
31. Conclusion
Concurrency Control
for Parallel ML
o Guarantee
correctness
o Maximize
concurrency
Code release in the works!
https://amplab.cs.berkeley.edu/projects/cc
ml/
xinghao@berkeley.edu
Applications
Correlation Clustering
Submodular Maximization
Clustering
Online Facility Location
Feature Modeling