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Computational Chemistry:
A DFT crash course
Useful Material
Books
 A chemists guide to density-functional theory
Wolfram Koch and Max C. Holthausen (second edition,
Wiley)
 The theory of the cohesive energies of solids
G. P. Srivastava and D. Weaire
Advances in Physics 36 (1987) 463-517
 Gulliver among the atoms
Mike Gillan, New Scientist 138 (1993) 34
Web
 www.nobel.se/chemistry/laureates/1998/
 www.abinit.org
Version 4.2.3 compiled for windows, install and good
tutorial
Outline: Part 1,
The Framework of DFT
DFT: the theory
 Schroedingers equation
 Hohenberg-Kohn Theorem
 Kohn-Sham Theorem
 Simplifying Schroedingers
 LDA, GGA
Elements of Solid State Physics
 Reciprocal space
 Band structure
 Plane waves
And then ?
 Forces (Hellmann-Feynman theorem)
 E.O., M.D., M.C.
Outline: Part2
Using DFT
Practical Issues
 Input File(s)
 Output files
 Configuration
 K-points mesh
 Pseudopotentials
 Control Parameters
 LDA/GGA
 Diagonalisation
Applications
 Isolated molecule
 Bulk
 Surface
The Basic Problem
Dangerously
classical
representation
Cores
Electron
s
Schroedingers Equation
   
i
i
i
i r
R
r
R
V
m
,
.
,
2
2











 

Hamiltonian operator
Kinetic Energy
Potential Energy
Coulombic interaction
External Fields
Very Complex many body Problem !!
(Because everything interacts)
Wave function
Energy levels
First approximations
Adiabatic (or Born-Openheimer)
 Electrons are much lighter, and faster
 Decoupling in the wave function
Nuclei are treated classically
 They go in the external potential
     
i
i
i
i r
R
r
R 
 .
,
H.K. Theorem
The ground state is unequivocally
defined by the electronic density
        r
r
r d
v
F
Ev 

 


Universal
functional
Functional ?? Function of a function
No more wave functions here
But still too complex
K.S. Formulation
Use an auxiliary system
 Non interacting electrons
 Same Density
 => Back to wave functions, but simpler this time
(a lot more though)
   
r
r
V
m
i
i
i
eff 

 .
2
2











        
r
r
r
r
r
r
r 


XC
eff d
V
V 





 
   


i
i
2
r
r 

N K.S. equations
(ONE particle in a box really)
(KS3)
(KS2)
(KS1)
Exchange correlation
potential
Self consistent loop
Solve the independents
K.S. =>wave functions
From density, work out
Effective potential
New density =
input density ??
Deduce new density from
w.f.
Initial density
Finita la musica
YES
N
O
DFT energy functional
           




 XC
NI E
d
d
d
v
T
E 






 

 r
r
r
r
r
r
r
r
2
1
Exchange correlation
funtional
Contains:
Exchange
Correlation
Interacting part of K.E.
Electrons are fermions
(antisymmetric wave function)
Exchange correlation
functional
At this stage, the only thing we need is:  

XC
E
Still a functional (way too many variables)
#1 approximation, Local Density Approximation:
Homogeneous electron gas
Functional becomes function !! (see KS3)
Very good parameterisation for  

XC
E
Generalised Gradient Approximation:
 

 
,
XC
E
GGA
LDA
DFT: Summary
The ground state energy depends only
on the electronic density (H.K.)
One can formally replace the SE for the
system by a set of SE for non-interacting
electrons (K.S.)
Everything hard is dumped into Exc
Simplistic approximations of Exc work !
LDA or GGA
different:
A little bit of Solid State Physics
Crystal structure Periodicity
Reciprocal space
Real Space
ai
ij
j
i b
a 
.
2


Reciprocal Space
bi
Brillouin
Zone
(Inverting effect)
k-vector (or k-point)
sin(k.r)
See X-Ray diffraction for instance
Also, Fourier transform and Bloch theorem
Band structure
Molecul
e
E
Crystal
Energy
levels (eigenvalues
of SE)
The k-point mesh
Brillouin
Zone
(6x6) mesh
Corresponds to a
supercell 36 time bigger
than the primitive cell
Question:
Which require a finer
mesh, Metals or Insulators
??
Plane waves
Project the wave functions on a basis set
Tricky integrals become linear algebra
Plane Wave for Solid State
Could be localised (ex: Gaussians)
+ + =
Sum of plane waves of increasing
frequency (or energy)
One has to stop: Ecut
Solid State: Summary
Quantities can be calculated in the
direct or reciprocal space
k-point Mesh
Plane wave basis set, Ecut
Now what ?
We have access to the energy of a
system, without any empirical input
With little efforts, the forces can be
computed, Hellman-Feynman theorem
Then, the methodologies discussed for atomistic
potential can be used
Energy Optimisation
Monte Carlo
Molecular dynamics
   
 



 r
r
r
F d
v i
i
i

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Computational Chemistry: A DFT crash course

  • 2. Useful Material Books A chemists guide to density-functional theory Wolfram Koch and Max C. Holthausen (second edition, Wiley) The theory of the cohesive energies of solids G. P. Srivastava and D. Weaire Advances in Physics 36 (1987) 463-517 Gulliver among the atoms Mike Gillan, New Scientist 138 (1993) 34 Web www.nobel.se/chemistry/laureates/1998/ www.abinit.org Version 4.2.3 compiled for windows, install and good tutorial
  • 3. Outline: Part 1, The Framework of DFT DFT: the theory Schroedingers equation Hohenberg-Kohn Theorem Kohn-Sham Theorem Simplifying Schroedingers LDA, GGA Elements of Solid State Physics Reciprocal space Band structure Plane waves And then ? Forces (Hellmann-Feynman theorem) E.O., M.D., M.C.
  • 4. Outline: Part2 Using DFT Practical Issues Input File(s) Output files Configuration K-points mesh Pseudopotentials Control Parameters LDA/GGA Diagonalisation Applications Isolated molecule Bulk Surface
  • 6. Schroedingers Equation i i i i r R r R V m , . , 2 2 Hamiltonian operator Kinetic Energy Potential Energy Coulombic interaction External Fields Very Complex many body Problem !! (Because everything interacts) Wave function Energy levels
  • 7. First approximations Adiabatic (or Born-Openheimer) Electrons are much lighter, and faster Decoupling in the wave function Nuclei are treated classically They go in the external potential i i i i r R r R . ,
  • 8. H.K. Theorem The ground state is unequivocally defined by the electronic density r r r d v F Ev Universal functional Functional ?? Function of a function No more wave functions here But still too complex
  • 9. K.S. Formulation Use an auxiliary system Non interacting electrons Same Density => Back to wave functions, but simpler this time (a lot more though) r r V m i i i eff . 2 2 r r r r r r r XC eff d V V i i 2 r r N K.S. equations (ONE particle in a box really) (KS3) (KS2) (KS1) Exchange correlation potential
  • 10. Self consistent loop Solve the independents K.S. =>wave functions From density, work out Effective potential New density = input density ?? Deduce new density from w.f. Initial density Finita la musica YES N O
  • 11. DFT energy functional XC NI E d d d v T E r r r r r r r r 2 1 Exchange correlation funtional Contains: Exchange Correlation Interacting part of K.E. Electrons are fermions (antisymmetric wave function)
  • 12. Exchange correlation functional At this stage, the only thing we need is: XC E Still a functional (way too many variables) #1 approximation, Local Density Approximation: Homogeneous electron gas Functional becomes function !! (see KS3) Very good parameterisation for XC E Generalised Gradient Approximation: , XC E GGA LDA
  • 13. DFT: Summary The ground state energy depends only on the electronic density (H.K.) One can formally replace the SE for the system by a set of SE for non-interacting electrons (K.S.) Everything hard is dumped into Exc Simplistic approximations of Exc work ! LDA or GGA
  • 14. different: A little bit of Solid State Physics Crystal structure Periodicity
  • 15. Reciprocal space Real Space ai ij j i b a . 2 Reciprocal Space bi Brillouin Zone (Inverting effect) k-vector (or k-point) sin(k.r) See X-Ray diffraction for instance Also, Fourier transform and Bloch theorem
  • 17. The k-point mesh Brillouin Zone (6x6) mesh Corresponds to a supercell 36 time bigger than the primitive cell Question: Which require a finer mesh, Metals or Insulators ??
  • 18. Plane waves Project the wave functions on a basis set Tricky integrals become linear algebra Plane Wave for Solid State Could be localised (ex: Gaussians) + + = Sum of plane waves of increasing frequency (or energy) One has to stop: Ecut
  • 19. Solid State: Summary Quantities can be calculated in the direct or reciprocal space k-point Mesh Plane wave basis set, Ecut
  • 20. Now what ? We have access to the energy of a system, without any empirical input With little efforts, the forces can be computed, Hellman-Feynman theorem Then, the methodologies discussed for atomistic potential can be used Energy Optimisation Monte Carlo Molecular dynamics r r r F d v i i i